PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00239g03011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 215aa    MW: 24577.1 Da    PI: 10.1237
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00239g03011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.56.6e-32959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s
  Peinf101Scf00239g03011.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59
                              79***********************************************96 PP
2K-box14.81.2e-0682109936
                     K-box   9 leeakaeslqqelakLkkeienLqreqR 36 
                               ++++++++ ++e+ +Lk+++e Lqr+qR
  Peinf101Scf00239g03011.1  82 QSANDTQNNYHEYLRLKARVELLQRSQR 109
                               678999********************99 PP
3K-box24.71e-0910914366100
                     K-box  66 RskKnellleqieelqkkekelqeenkaLrkklee 100
                               RskK++++l+q+ +lq+ke++l e+nk+Lr+klee
  Peinf101Scf00239g03011.1 109 RSKKTQHMLDQLADLQQKEQMLAEANKQLRRKLEE 143
                               9*******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.9E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.585161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-34279IPR002100Transcription factor, MADS-box
CDDcd002657.89E-47279No hitNo description
PRINTSPR004044.8E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.66153147IPR002487Transcription factor, K-box
PfamPF014866.0E-6109141IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCST  60
SSMMKTLEKY QQCSYASLDP MQSANDTQNN YHEYLRLKAR VELLQRSQRS KKTQHMLDQL  120
ADLQQKEQML AEANKQLRRK LEESAARIPL RLSWDNGGQP MQHNRLPPQT EGFFQPLGLN  180
SSSPQFGYSP MGANEVNNAA SAAQNMNGFI PGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-22187182MEF2 CHIMERA
6byy_B8e-22187182MEF2 CHIMERA
6byy_C8e-22187182MEF2 CHIMERA
6byy_D8e-22187182MEF2 CHIMERA
6bz1_A7e-22187182MEF2 CHIMERA
6bz1_B7e-22187182MEF2 CHIMERA
6bz1_C7e-22187182MEF2 CHIMERA
6bz1_D7e-22187182MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269|PubMed:28528644}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3352361e-177AF335236.1 Petunia x hybrida MADS-box transcription factor FBP9 (FBP9) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761698.11e-131PREDICTED: MADS-box protein CMB1-like
SwissprotK4DEK01e-121J2_SOLLC; MADS-box protein J2
TrEMBLQ9ATF11e-151Q9ATF1_PETHY; MADS-box transcription factor FBP9
STRINGXP_009761698.11e-131(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03710.13e-79MIKC_MADS family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Soyk S, et al.
    Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene.
    Cell, 2017. 169(6): p. 1142-1155.e12
    [PMID:28528644]