PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00244g17005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 571aa    MW: 64994.3 Da    PI: 5.5238
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00244g17005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2913.1e-891975691374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalk 82 
                               lve Ll+ Ae v +g++ +a+++L +  + +s +g+p++R++ yf +AL+ r++  ++  + k +  +  ++ +    +    + 
  Peinf101Scf00244g17005.1 197 LVENLLASAEKVGNGQFDRARKILDNCDKFCSVTGNPIERIVYYFSQALHDRINWeTGRDTTKGIGKKLLEHIEntLMSLSPCMI 281
                               5789*************************************************98677888888855544432211333333444 PP

                      GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerL 165
                               + +++ P+ ++s++ta qaI + v+++e+vHiiD++i+ G+QW  L+qaLa+ +  ++  +l+iT++     + ++++e t erL
  Peinf101Scf00244g17005.1 282 AAHQCVPLSQVSQFTAVQAIIDHVAESEKVHIIDLEIGSGMQWTILMQALATHQceSSIKHLKITALCT---KLRHKIEDTLERL 363
                               499************************************************999867778*******99...57999******** PP

                      GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                +fA++l++pf+fn++++ ++ +l+ e+++++++Ea+aV + + l+r+l ++ +l    d++++++k+++P+v++++e ea+hns
  Peinf101Scf00244g17005.1 364 MSFAKSLNLPFSFNIVMVADVMELKQEDFELDSEEATAVFSRYYLMRMLVSPDKL----DSLMRVIKGINPRVMIITEVEANHNS 444
                               *************************************************555555....55************************ PP

                      GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                               + F++rf+eal +y a+fd le  + ++++ ri  E e l++ i+++va+eg+er+ rh +   Wr  + + G+++v+ls++ + 
  Peinf101Scf00244g17005.1 445 PVFVDRFVEALFFYGAFFDLLEDCMKHDEKSRIATESEHLSQGIRSIVAAEGEERTIRHVKIDIWRTFFARYGMEEVELSKSSMY 529
                               ************************************************************************************* PP

                      GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               qa+l+l+++  +   +++ ++++l++gWk+ p+ s+SaW+
  Peinf101Scf00244g17005.1 530 QAHLVLKNFVcGSSCTLDMNHNCLLIGWKGTPINSLSAWK 569
                               **********9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.344171548IPR005202Transcription factor GRAS
PfamPF035141.1E-86197569IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MIPSDQSNFD EVPDKCRSLN SLESNEGEDS RKSSEMNLFS PGLGEHITEK GPSCQQDKLQ  60
LLVDFVSLDD WDFDVVPLQS QSNLDEAKNI PSVQPEKSYE IIESKRKMRS PFNILQDYDK  120
RLRRLKTEKN MSVKTNYKIE CIKANECKSS TDAILRLGAE KFIQSFNISG QESYMFSHPF  180
AISFVGLSEE DTRSVALVEN LLASAEKVGN GQFDRARKIL DNCDKFCSVT GNPIERIVYY  240
FSQALHDRIN WETGRDTTKG IGKKLLEHIE NTLMSLSPCM IAAHQCVPLS QVSQFTAVQA  300
IIDHVAESEK VHIIDLEIGS GMQWTILMQA LATHQCESSI KHLKITALCT KLRHKIEDTL  360
ERLMSFAKSL NLPFSFNIVM VADVMELKQE DFELDSEEAT AVFSRYYLMR MLVSPDKLDS  420
LMRVIKGINP RVMIITEVEA NHNSPVFVDR FVEALFFYGA FFDLLEDCMK HDEKSRIATE  480
SEHLSQGIRS IVAAEGEERT IRHVKIDIWR TFFARYGMEE VELSKSSMYQ AHLVLKNFVC  540
GSSCTLDMNH NCLLIGWKGT PINSLSAWKF S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-4223056936375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246256.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLA0A1J6IDJ40.0A0A1J6IDJ4_NICAT; Della protein rgl2
STRINGXP_009800222.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-56RGA-like 2