PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00244g17029.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 349aa    MW: 39695.1 Da    PI: 6.6923
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00244g17029.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS105.76.4e-332920535215
                      GRAS  35 gdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDf 117
                                +p+qR++ yf+eAL++r+ ++   + +  + +++ + +   +  l+al + +e  P+  ++++t  qaI + +++++rvH +D+
  Peinf101Scf00244g17029.1  29 VNPLQRVVYYFAEALRNRIDKELGVTPEGGKRKKAVDVEkaIKLMLSALLACQEELPFQYITQFTGMQAIFDNIKSAKRVHLVDL 113
                               589*****************944444444433333322222333334444499******************************** PP

                      GRAS 118 disqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201
                               ++  Gl  p +++aLa+R++     l+iT+vg     sk+++eet +rL++fAe++++pf f+++   +l+dl+ e+++ +++E+
  Peinf101Scf00244g17029.1 114 GLHSGLPVPIIMHALANRNQClLELLKITVVGT----SKQNIEETCKRLSSFAETMNIPFFFHMV---ELKDLQKEKFESQEDEV 191
                               *******************662569********....9**************************8...9**************** PP

                      GRAS 202 laVnlvlqlhrlld 215
                               +aV +  +l ++l+
  Peinf101Scf00244g17029.1 192 VAVYSESHLCTMLA 205
                               ****9999988875 PP
2GRAS71.71.4e-22212334245366
                      GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                               ea++n++ F  rf   l+++ a++d+l + + +++++r+  E  ++ + i+nv+  eg+er++rh + + Wr+ +   G  + +l
  Peinf101Scf00244g17029.1 212 EASTNTPIFIYRFNALLSFCGAILDCLGTCMKPDDQNRAIAEGNYFPETIQNVIISEGEERFNRHSKISFWRNLFAGYGIVETEL 296
                               7899********************************************************************************* PP

                      GRAS 330 sekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                               s++   qa+ll+++ + ++  +++ ++++++l Wk++p
  Peinf101Scf00244g17029.1 297 SDSSLYQASLLIKRSAcWNSCSLDFDRKCMILKWKGNP 334
                               ****************9999***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.6471321IPR005202Transcription factor GRAS
PfamPF035142.2E-3029205IPR005202Transcription factor GRAS
PfamPF035144.7E-20212334IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVQPCKLIVQ APQVALSSSI FNRIFLSFVN PLQRVVYYFA EALRNRIDKE LGVTPEGGKR  60
KKAVDVEKAI KLMLSALLAC QEELPFQYIT QFTGMQAIFD NIKSAKRVHL VDLGLHSGLP  120
VPIIMHALAN RNQCLLELLK ITVVGTSKQN IEETCKRLSS FAETMNIPFF FHMVELKDLQ  180
KEKFESQEDE VVAVYSESHL CTMLAWPDHL IEASTNTPIF IYRFNALLSF CGAILDCLGT  240
CMKPDDQNRA IAEGNYFPET IQNVIISEGE ERFNRHSKIS FWRNLFAGYG IVETELSDSS  300
LYQASLLIKR SACWNSCSLD FDRKCMILKW KGNPCEVPFC LEIPISVYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-203031538342GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358212.12e-97PREDICTED: DELLA protein RGL2-like
TrEMBLA0A200PWC43e-95A0A200PWC4_9MAGN; Transcription factor GRAS
TrEMBLM1BZ607e-96M1BZ60_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000562321e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85001728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.16e-32RGA-like protein 3