PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00244g18025.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WRKY

Protein Properties

Length: 302aa MW: 33685.6 Da PI: 6.8577

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00244g18025.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.7	9.9e-33	137	195	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK vk+s+fprsYYrCt+ +C vkk+vers +d+++v++tYeg+H+h+ Peinf101Scf00244g18025.1 137 LDDGFRWRKYGQKAVKNSPFPRSYYRCTTVSCGVKKRVERSLKDTSIVVTTYEGTHTHT 195 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-33	122	197	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-28	129	197	IPR003657	WRKY domain
PROSITE profile	PS50811	29.826	132	197	IPR003657	WRKY domain
SMART	SM00774	2.5E-37	137	196	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	138	194	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0009733	Biological Process	response to auxin
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MEKENKLKAD TSLENSIFSL PNIFDIPYET EKDSLDMLET MFGVYNQDYT TTSYISDLLF 60 MPCQPEAMPF TTNSTVQESC EVVNTPATPN LSCISSSSTE VADDDQNIRA LRPKKKNQKT 120 PREPRFAFMT KSEIDHLDDG FRWRKYGQKA VKNSPFPRSY YRCTTVSCGV KKRVERSLKD 180 TSIVVTTYEG THTHTCPTRP SRSIGFPPGT TTYGGAIGGY SGGETYSNAA LSIPQHHYPS 240 TTLPLNLCAG GYNSSLATIN SLQEGRFSPS HYSSSLARDN GLLHDMVPSQ IRRDLKEEYV 300 GN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	4e-27	127	197	7	77	Probable WRKY transcription factor 4
2lex_A	4e-27	127	197	7	77	Probable WRKY transcription factor 4
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00069	PBM	Transfer from AT2G47260	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	2e-35	HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBank	HG975517	2e-35	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019236030.1	1e-106	PREDICTED: probable WRKY transcription factor 23
TrEMBL	A0A1J6K2J0	1e-105	A0A1J6K2J0_NICAT; Putative wrky transcription factor 23
STRING	XP_009621692.1	1e-102	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1309	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47260.1	5e-51	WRKY DNA-binding protein 23