PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00250g01003.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 182aa MW: 19923.3 Da PI: 6.6553

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00250g01003.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.4	2.6e-43	11	109	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrrkC+++C++apyfp e+p kfanvhklFGasnv kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+ Peinf101Scf00250g01003.1 11 PCAACKFLRRKCVPGCIFAPYFPPEEPTKFANVHKLFGASNVGKLLNEIQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQR 95 7********************************************************************************** PP DUF260 86 qleqlkaelallke 99 ql +l++el+++++ Peinf101Scf00250g01003.1 96 QLIHLQKELDATNA 109 *******99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.106	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-43	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MASSSSLSNP PCAACKFLRR KCVPGCIFAP YFPPEEPTKF ANVHKLFGAS NVGKLLNEIQ 60 PHQREDAVNS LAYEAEARMK DPVYGCVGAI SVLQRQLIHL QKELDATNAD LMRYANREVN 120 SSGGIVINNN IIQMGNQQRS FNSSGGIASA IDQTYGFCVP SYSSHQLNNN FSGNHNPEVD 180 DE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-64	2	125	2	122	LOB family transfactor Ramosa2.1
5ly0_B	5e-64	2	125	2	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597524.1	4e-99	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_016505823.1	4e-99	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_018625398.1	4e-99	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_018625399.1	4e-99	PREDICTED: LOB domain-containing protein 25-like isoform X1
Swissprot	Q9FML4	6e-65	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1S4CXF4	9e-98	A0A1S4CXF4_TOBAC; LOB domain-containing protein 25-like
STRING	XP_009597524.1	1e-98	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	6e-67	LOB domain-containing protein 25

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]