PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00250g01004.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 169aa MW: 18305.3 Da PI: 6.091

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00250g01004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.9	1.1e-40	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C aCk+l+rkC+++C++apyfp e+p kfanvh++FGasnv kll++l++++re a++sl+yeAear+rdPvyG+vg+i lq+ Peinf101Scf00250g01004.1 11 PCGACKFLGRKCVPGCIFAPYFPPEDPIKFANVHRVFGASNVGKLLSDLQPHQREVAANSLAYEAEARMRDPVYGCVGTIAVLQR 95 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 ql + + el+++++e Peinf101Scf00250g01004.1 96 QLINFQRELDATNAE 110 *******999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.323	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.0E-40	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MASSSSFPNS PCGACKFLGR KCVPGCIFAP YFPPEDPIKF ANVHRVFGAS NVGKLLSDLQ 60 PHQREVAANS LAYEAEARMR DPVYGCVGTI AVLQRQLINF QRELDATNAE LMKYANREVG 120 SSGGVVINNN QMGNQQRSFN SSGGIASDQT SHQLNDDVSG NHNPEVNDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-57	10	120	10	120	LOB family transfactor Ramosa2.1
5ly0_B	8e-57	10	120	10	120	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597524.1	3e-74	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_016505823.1	3e-74	PREDICTED: LOB domain-containing protein 25-like
Refseq	XP_018625398.1	3e-74	PREDICTED: LOB domain-containing protein 25-like isoform X1
Refseq	XP_018625399.1	3e-74	PREDICTED: LOB domain-containing protein 25-like isoform X1
Swissprot	Q9FML4	1e-58	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A1S4CXF4	7e-73	A0A1S4CXF4_TOBAC; LOB domain-containing protein 25-like
STRING	XP_009597524.1	1e-73	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	6e-61	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]