PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00258g01007.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 92aa    MW: 10786.7 Da    PI: 10.1846
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00258g01007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.71.8e-19858151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              k+ie+ ++rqvtfskRr+ + KKAeE+ v Cd++v+ + fs++g++  +++
  Peinf101Scf00258g01007.1  8 KKIEEITKRQVTFSKRRTSLTKKAEEIAVCCDVDVLFVAFSPSGRINKFCT 58
                              689********************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.698160IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-20159IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-16222IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-23384IPR002100Transcription factor, MADS-box
PfamPF003192.3E-19956IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-162237IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-163758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MGRKIEMKKI EEITKRQVTF SKRRTSLTKK AEEIAVCCDV DVLFVAFSPS GRINKFCTKK  60
SIEDFLLRYM NLPVERRLTH IADVQVLHYS IH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630259.14e-49PREDICTED: agamous-like MADS-box protein AGL104
RefseqXP_016446375.18e-47PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ9LM461e-20AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A314LD597e-47A0A314LD59_NICAT; Uncharacterized protein
STRINGXP_009630259.11e-48(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.18e-19AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]