PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00261g02019.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

E2F/DP

Protein Properties

Length: 157aa MW: 18011.2 Da PI: 5.1037

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00261g02019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	53	5.8e-17	4	60	29	71
E2F_TDP 29 evakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 +va+e+++e d+kn rRR+YD+lNVL+al+++e+ +++eirwkg Peinf101Scf00261g02019.1 4 KVADEIIAEfkatesnssvphnesDEKNARRRVYDALNVLMALDIVER-DRKEIRWKG 60 699*******************************************.*****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01372	1.4E-5	1	60	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	6.0E-23	4	64	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	1.9E-11	5	61	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02319	4.6E-13	5	60	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF144074	5.23E-20	68	153	No hit	No description
SMART	SM01138	2.6E-10	70	148	IPR014889	Transcription factor DP, C-terminal
Pfam	PF08781	1.2E-13	96	149	IPR014889	Transcription factor DP, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005667	Cellular Component	transcription factor complex
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MQLKVADEII AEFKATESNS SVPHNESDEK NARRRVYDAL NVLMALDIVE RDRKEIRWKG 60 LPNSDSRDME ETKMLHAELM AKIGKKAAYL KDLEEQTAPH ATVEIEISED MQLVHFDFNS 120 TPFSLHDDAY VLKLMHRYEL FEGKNVSQTS SIHSSSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1cf7_B	9e-16	5	67	34	95	PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specific genes. {ECO:0000269\|PubMed:11889041, ECO:0000269\|PubMed:11891240}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by the transcription factor ERF114. {ECO:0000269\|PubMed:23616605}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019071357.1	4e-79	transcription factor-like protein DPA isoform X1
Refseq	XP_019071358.1	5e-79	transcription factor-like protein DPA isoform X3
Swissprot	Q9FNY3	3e-52	DPA_ARATH; Transcription factor-like protein DPA
TrEMBL	A0A3Q7IU12	1e-77	A0A3Q7IU12_SOLLC; Uncharacterized protein
STRING	Solyc09g010670.2.1	5e-79	(Solanum lycopersicum)
STRING	PGSC0003DMT400023036	3e-78	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14883	9	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02470.3	5e-54	Transcription factor DP