PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00267g04013.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 262aa MW: 30062.2 Da PI: 7.0333

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00267g04013.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	142.3	2.8e-44	4	134	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksg 81 pGfrF Pt+eel+++yL++k+egk+ el++vi+ + iy+++Pw+Lpk + +++++w+fF++r++++a+g r+ r+t sg Peinf101Scf00267g04013.1 4 SPGFRFYPTEEELITFYLHNKLEGKRPELDRVIPVITIYDLDPWHLPKfpgelC-MGDREQWFFFVPRQEREARGGRPCRTTGSG 87 69*************************999**********96677633.34667********************* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatg+ v+s++++++g+kk++vfykg+ap+g+kt W m+eyr+ Peinf101Scf00267g04013.1 88 YWKATGSPSYVYSAESKVIGVKKSMVFYKGKAPTGRKTVWKMNEYRA 134 *******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-47	2	164	IPR003441	NAC domain
PROSITE profile	PS51005	46.927	3	166	IPR003441	NAC domain
Pfam	PF02365	5.7E-23	5	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEISPGFRFY PTEEELITFY LHNKLEGKRP ELDRVIPVIT IYDLDPWHLP KFPGELCMGD 60 REQWFFFVPR QEREARGGRP CRTTGSGYWK ATGSPSYVYS AESKVIGVKK SMVFYKGKAP 120 TGRKTVWKMN EYRAIEEENS TSSSFSIPKC ILQLRHEMSL CRVYVISGSL RSFDRRPVAA 180 VTRELPAPEH RNPEVSRDDS SAVIVKNVSK METLSSPESL AIEEEYVNNL HDQVPIAPSM 240 NSNNMAKSDL EPFSGWEQLN WI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-35	1	164	18	166	NAC domain-containing protein 19
3swm_B	1e-35	1	164	18	166	NAC domain-containing protein 19
3swm_C	1e-35	1	164	18	166	NAC domain-containing protein 19
3swm_D	1e-35	1	164	18	166	NAC domain-containing protein 19
3swp_A	1e-35	1	164	18	166	NAC domain-containing protein 19
3swp_B	1e-35	1	164	18	166	NAC domain-containing protein 19
3swp_C	1e-35	1	164	18	166	NAC domain-containing protein 19
3swp_D	1e-35	1	164	18	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB021178	1e-164	AB021178.1 Nicotiana tabacum TERN mRNA for NAC-domain protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009597635.1	1e-143	PREDICTED: NAC domain-containing protein 90-like isoform X1
Swissprot	Q9FMR3	1e-80	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1S3XG35	1e-140	A0A1S3XG35_TOBAC; NAC domain-containing protein 90-like
STRING	XP_009597635.1	1e-143	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2494	23	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	4e-83	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]