PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00269g04015.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NAC
Protein Properties Length: 392aa    MW: 44407.6 Da    PI: 5.2537
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00269g04015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.74e-52231501128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               l+pGfrFhPtdeelv +yL++k+ gk++++ ++++e+d+yk+ePw+L   +++k+++ ewyfFs+ dkky +g+r nrat +gyW
  Peinf101Scf00269g04015.1  23 LAPGFRFHPTDEELVRYYLRRKIIGKPFRF-QAVTEIDVYKSEPWELAgySSLKNRDLEWYFFSPVDKKYGNGSRLNRATGQGYW 106
                               579*************************99.88**************85336777777*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               katgkd++v + k++++g+kktLvf++grap+g++t+Wvmheyrl
  Peinf101Scf00269g04015.1 107 KATGKDRHVRH-KSQDIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 150
                               ***********.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-6318173IPR003441NAC domain
PROSITE profilePS5100558.34223173IPR003441NAC domain
PfamPF023652.9E-2825150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEQEGSLVVT VATQAPAPAP TSLAPGFRFH PTDEELVRYY LRRKIIGKPF RFQAVTEIDV  60
YKSEPWELAG YSSLKNRDLE WYFFSPVDKK YGNGSRLNRA TGQGYWKATG KDRHVRHKSQ  120
DIGMKKTLVF HSGRAPDGKR TNWVMHEYRL TDEELEKAGI VQDSFVLCRI FHKSGLGPPN  180
SDRYAPFVEE EWDDDAAVVP GEEAEDDVAN GDEARVEGND LDQDARQKTP RHCENLIEPQ  240
NLPPVCKRES SEDHEFLSLS QSKRPKHDDP SSSRANGSED STISSHDPPT MMMMTNSSPT  300
LLGFPLLEST EPKESQPSNP PAFDSSNLEK SVPPGYLKFI SNLEHEILNV SMEKETLKLE  360
VMRAQAMMNV LQSRIDLLNR ENEDMRRLVR GG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-502217319168NAC domain-containing protein 19
3swm_B1e-502217319168NAC domain-containing protein 19
3swm_C1e-502217319168NAC domain-containing protein 19
3swm_D1e-502217319168NAC domain-containing protein 19
3swp_A1e-502217319168NAC domain-containing protein 19
3swp_B1e-502217319168NAC domain-containing protein 19
3swp_C1e-502217319168NAC domain-containing protein 19
3swp_D1e-502217319168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5098710.0AF509871.1 Petunia x hybrida nam-like protein 8 (NH8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009796718.10.0PREDICTED: NAC domain-containing protein 78-like
RefseqXP_016464323.10.0PREDICTED: NAC domain-containing protein 78-like
SwissprotQ9SQY01e-108NAC52_ARATH; NAC domain containing protein 52
TrEMBLQ8LRL70.0Q8LRL7_PETHY; Nam-like protein 8
STRINGXP_009796718.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31402448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.11e-108NAC domain containing protein 50
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]