PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00291g04014.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 669aa MW: 74373.9 Da PI: 9.2063

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00291g04014.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.7	5e-15	86	168	1	91
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fY+++Ak+ GFs++k++ kk+ ++ + it r++ C k gk+++ +++ ++++Cka + ++ + + wev+++ Peinf101Scf00291g04014.1 86 DFYQDHAKKHGFSITKRSCKKQsSEYDLITGRRLSCHKAGKPARYQTS----------KKVDCKAGIYATLCSdRTSWEVKSVTV 160 6************99998875777889********9986655..........9*********9999***** PP FAR1 84 eHnHelap 91 eHnH+l p Peinf101Scf00291g04014.1 161 EHNHDLEP 168 ***975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-11	86	168	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	10.435	374	412	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0042	387	414	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence Send to blast
MQSFMDVEES SSNTQAGPGI TASVLSQVLG VHQDDSLFDN RSNSSMAGEN IDPNVATGEG 60 PGINPRAPAG GPTVGMKFPS LEAMVDFYQD HAKKHGFSIT KRSCKKQSSE YDLITGRRLS 120 CHKAGKPARY QTSKKVDCKA GIYATLCSDR TSWEVKSVTV EHNHDLEPRL SWLMAAHRKV 180 TPALKRDLVA ADTAGVRPCR SFRTMEIMNG GTENMGSLPR DCRNFINQHR KMRLKHGDAE 240 ASQWVPVYLT DTFWAGMRST QRSESMHAFF DQFITSRTNL LTFVMQYEVA LKTKLDKELK 300 EEESSKNTRL FSVTGSQWEE QLRAGLTRNI YDMHRKQIQD SVGCNFVGFN VQDEVETFSV 360 CDTRMGLEYA GTEYIMTVVY KRDGQYLDCT CKLFNTRGII CRHMILVVKY HQMPELNERY 420 IMRRWRGDIS RPHLWAYVPE GYPQMSDKFK RLHGLKGIFY KCAERAIQSD KLTRKHGLEL 480 VASFSKPNND DPVPDDIHDV EGHRSDVPIL DPRFLRSKGR PYLIRVRNNW NRRQRTYGTS 540 RRGWGRSRAG SAGAGCGSGR VDASNGNRGV DASRGSGRGG EGGSRGACGA GRGSGGVDAR 600 NGIGGVDASR GNAAVDATTA CVVNATGGNS EVDARRGNAI VECSIANASD ALLKLILCVE 660 IFLNQFYFL

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence Send to blast

MQSFMDVEES SSNTQAGPGI TASVLSQVLG VHQDDSLFDN RSNSSMAGEN IDPNVATGEG  60
PGINPRAPAG GPTVGMKFPS LEAMVDFYQD HAKKHGFSIT KRSCKKQSSE YDLITGRRLS  120
CHKAGKPARY QTSKKVDCKA GIYATLCSDR TSWEVKSVTV EHNHDLEPRL SWLMAAHRKV  180
TPALKRDLVA ADTAGVRPCR SFRTMEIMNG GTENMGSLPR DCRNFINQHR KMRLKHGDAE  240
ASQWVPVYLT DTFWAGMRST QRSESMHAFF DQFITSRTNL LTFVMQYEVA LKTKLDKELK  300
EEESSKNTRL FSVTGSQWEE QLRAGLTRNI YDMHRKQIQD SVGCNFVGFN VQDEVETFSV  360
CDTRMGLEYA GTEYIMTVVY KRDGQYLDCT CKLFNTRGII CRHMILVVKY HQMPELNERY  420
IMRRWRGDIS RPHLWAYVPE GYPQMSDKFK RLHGLKGIFY KCAERAIQSD KLTRKHGLEL  480
VASFSKPNND DPVPDDIHDV EGHRSDVPIL DPRFLRSKGR PYLIRVRNNW NRRQRTYGTS  540
RRGWGRSRAG SAGAGCGSGR VDASNGNRGV DASRGSGRGG EGGSRGACGA GRGSGGVDAR  600
NGIGGVDASR GNAAVDATTA CVVNATGGNS EVDARRGNAI VECSIANASD ALLKLILCVE  660
IFLNQFYFL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7498	2	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-21	FAR1 family protein