PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00297g01017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family ERF
Protein Properties Length: 180aa    MW: 19949.3 Da    PI: 7.8351
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00297g01017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-173887255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                               ykGVr++  +g+WvAeIr+p   + r +r +lg+f   ++Aa a++aa++kl+g
  Peinf101Scf00297g01017.1 38 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFENSYDAAVAYDAAARKLYG 87
                              69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-173797No hitNo description
PROSITE profilePS5103221.5493895IPR001471AP2/ERF domain
SMARTSM003802.6E-3338101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-293896IPR001471AP2/ERF domain
PfamPF008476.8E-113887IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-203896IPR016177DNA-binding domain
PRINTSPR003672.1E-83950IPR001471AP2/ERF domain
PRINTSPR003672.1E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSSTYTSVDQ RKTKKITQAT SRKGCMRGKG GPENASCTYK GVRQRTWGKW VAEIREPNRG  60
ARLWLGTFEN SYDAAVAYDA AARKLYGPDA KLNLPHLYNK QAQTQAHSPT QNCMAMNNAA  120
SEGLGGEMWR DLNMNLPEID DSSIWEEAKA TTSFQEAVIS DPGIYACNLD DGINYPPWCG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-173999667ATERF1
3gcc_A2e-173999667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00240DAPTransfer from AT1G75490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266688.16e-73PREDICTED: dehydration-responsive element-binding protein 2D-like isoform X1
RefseqXP_019266689.16e-73PREDICTED: dehydration-responsive element-binding protein 2D-like isoform X1
RefseqXP_019266690.16e-73PREDICTED: dehydration-responsive element-binding protein 2D-like isoform X1
SwissprotQ9LQZ23e-54DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A314KZM61e-71A0A314KZM6_NICAT; Dehydration-responsive element-binding protein 2d
STRINGXP_009767453.13e-70(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31552247
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.18e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]