PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00300g10012.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NF-YC

Protein Properties

Length: 251aa MW: 28906.9 Da PI: 7.5937

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00300g10012.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	30.7	6.9e-10	150	235	14	99
NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlr.swlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ++ ++P ri++i+k+++ +++s ea ++ ka e f+ e+ r ++ a + + + ++++v++ + fdfl d vp Peinf101Scf00300g10012.1 150 SESSLYQFPHNRIHRIIKSENADSKMSQEAIFMVNKATEKFL-EVFCReAYACAFLDRNHYVGYDHLSSVVSKRHRFDFLSDFVP 233 44556799******************************96.66666166666666667788899***************** PP NF-YC 98 rd 99 r+ Peinf101Scf00300g10012.1 234 RK 235 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.38E-16	148	235	IPR009072	Histone-fold
Pfam	PF00808	1.0E-10	156	219	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.4E-19	157	234	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MPKESENLVV PSSSNEECVS DSDEETNNNN NNSANRKEDL VYSRKGNREN ESLKTYIRKQ 60 KIKNEEEKTH NGSQGPNKKK RQVEKVGKKA KKTAEEKAPK KARANNKQGD EEGEEKLVKK 120 MPKSNGEEKK SNAKQKREDG EEEEDEDDKS ESSLYQFPHN RIHRIIKSEN ADSKMSQEAI 180 FMVNKATEKF LEVFCREAYA CAFLDRNHYV GYDHLSSVVS KRHRFDFLSD FVPRKVRAED 240 ALAEISKAEE T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800538.1	2e-60	PREDICTED: DNA ligase 1-like
Refseq	XP_016513155.1	2e-60	PREDICTED: DNA ligase 1-like isoform X1
TrEMBL	A0A1S4DIC9	5e-59	A0A1S4DIC9_TOBAC; DNA ligase 1-like isoform X1
TrEMBL	A0A1U7YBN9	5e-59	A0A1U7YBN9_NICSY; DNA ligase 1-like
STRING	XP_009800538.1	8e-60	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9304	14	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	4e-27	nuclear factor Y, subunit C10