PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00304g15004.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 27923.8 Da    PI: 10.1165
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00304g15004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-314190150
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Peinf101Scf00304g15004.1 41 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 90
                              79***********************************************8 PP
2K-box95.67.8e-32109198493
                     K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                               s++ s +ea+a+++qqe++kL+++i nLq+++R++lGe+L  L+l++L++Leq++ek+++kiR+kKnell+++ie++qk+  e++
  Peinf101Scf00304g15004.1 109 SNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKRIAETE 193
                               4444599**************************************************************************9999 PP

                     K-box  89 eenka 93 
                               + +++
  Peinf101Scf00304g15004.1 194 RSQQM 198
                               88765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.6693393IPR002100Transcription factor, MADS-box
SMARTSM004323.4E-413392IPR002100Transcription factor, MADS-box
CDDcd002658.14E-4634110No hitNo description
SuperFamilySSF554553.53E-3334106IPR002100Transcription factor, MADS-box
PROSITE patternPS0035003589IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-333555IPR002100Transcription factor, MADS-box
PfamPF003199.1E-274289IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-335570IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-337091IPR002100Transcription factor, MADS-box
PfamPF014863.6E-22117196IPR002487Transcription factor, K-box
PROSITE profilePS5129713.017119204IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVGENRMLKA RIPSAAMEFQ SDLTREISPQ RKLGRGKIEI KRIENTTNRQ VTFCKRRNGL  60
LKKAYELSVL CDAEVALIVF SSRGRLYEYA NNSVKATIER YKKACSDSSN TGSIAEANAQ  120
YYQQEASKLR AQIGNLQNQN RNFLGESLAA LNLRDLRNLE QKIEKGISKI RAKKNELLFA  180
EIEYMQKRIA ETERSQQMNL MPGSSSYDLV PPQQSFDARN YLQVNGLQTN NHYPRQDQPP  240
LQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-2033101169Myocyte-specific enhancer factor 2B
1tqe_Q1e-2033101169Myocyte-specific enhancer factor 2B
1tqe_R1e-2033101169Myocyte-specific enhancer factor 2B
1tqe_S1e-2033101169Myocyte-specific enhancer factor 2B
5f28_A1e-2033101169MEF2C
5f28_B1e-2033101169MEF2C
5f28_C1e-2033101169MEF2C
5f28_D1e-2033101169MEF2C
6c9l_A1e-2033101169Myocyte-specific enhancer factor 2B
6c9l_B1e-2033101169Myocyte-specific enhancer factor 2B
6c9l_C1e-2033101169Myocyte-specific enhancer factor 2B
6c9l_D1e-2033101169Myocyte-specific enhancer factor 2B
6c9l_E1e-2033101169Myocyte-specific enhancer factor 2B
6c9l_F1e-2033101169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX729120.0X72912.1 P.hybrida pMADS3 mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019233178.11e-151PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_019233179.11e-151PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_019233180.11e-151PREDICTED: floral homeotic protein AGAMOUS isoform X3
SwissprotQ408851e-164AG_PETHY; Floral homeotic protein AGAMOUS
TrEMBLA0A1J6KBS91e-149A0A1J6KBS9_NICAT; Floral homeotic protein agamous
STRINGXP_009802759.11e-149(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.16e-93MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]