PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00305g06007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

WRKY

Protein Properties

Length: 208aa MW: 22792.3 Da PI: 6.2375

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00305g06007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.8	3.5e-31	29	87	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YY+C+s+ gCp++k+vers++dp+++ itY+++Hnh+ Peinf101Scf00305g06007.1 29 SDSWSWRKYGQKPIKGSPYPRGYYKCSSSkGCPARKQVERSHHDPTMLLITYSSDHNHT 87 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-32	20	89	IPR003657	WRKY domain
PROSITE profile	PS50811	31.812	23	89	IPR003657	WRKY domain
SuperFamily	SSF118290	9.29E-27	24	89	IPR003657	WRKY domain
SMART	SM00774	2.8E-35	28	88	IPR003657	WRKY domain
Pfam	PF03106	3.4E-26	30	86	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
RKGIKKRAIS VPISECDGSR SKGEVYPPSD SWSWRKYGQK PIKGSPYPRG YYKCSSSKGC 60 PARKQVERSH HDPTMLLITY SSDHNHTLPP AASKHRHPTT PTSIPTTTPA STDTNNSPAA 120 TPEDEVAVFT YQPNNDFPEI PGELGWFSDV GSTLMESTSL VGSAWIDNDA AVMLPIGEED 180 KSLFGDLGEL PECSVVFRRY SVDSPCTD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-21	29	91	15	76	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593761.1	2e-91	PREDICTED: probable WRKY transcription factor 65 isoform X1
Refseq	XP_009593762.1	2e-91	PREDICTED: probable WRKY transcription factor 69 isoform X2
Swissprot	Q9LP56	5e-60	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	M1BTR1	2e-89	M1BTR1_SOLTU; Uncharacterized protein
STRING	XP_009593761.1	7e-91	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7468	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	2e-61	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]