PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00305g06010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 333aa    MW: 38931.6 Da    PI: 10.02
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00305g06010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1331.9e-10551141778
                      FAR1  17 skskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 
                                  ++s+++++i+ ++f Cskeg++ +++ +   ++++r etr gCk ++   k+k +gkw  
  Peinf101Scf00305g06010.1  55 VVISRSRKDKSIIGQEFICSKEGFHLKKSLE---SNQQRDETRQGCKVMIYFPKKKeEGKWIF 114
                               556789999****************999877...9999**************9998899*976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.5E-853115IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGVGGSEEEF EGDMSTNIVP LNSQLSDEES RAPYISTKFQ SLDTHLNFIL NMRIVVISRS  60
RKDKSIIGQE FICSKEGFHL KKSLESNQQR DETRQGCKVM IYFPKKKEEG KWIFQEELII  120
SQKFVSEKIE VKDGMNIYKV HEFQQQKSEY IIRLNLDLKN IACSDGIYKE INPFTSTMLS  180
TRSFATKEKF VDVSHEQHNL KPSTVWFNNI MVHSLGIFER ATRSRKHYKF SYKKILQLSK  240
ELDELPYEFE DNNVWSGQVN ESNMELNLES KHYLLYPPRA ANKERPRSLR MKGGLKSSRK  300
VKRVLLKNQK GKSKAQRNER EQAQALKLKC NIK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883762.18e-61protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025886302.14e-59protein FAR1-RELATED SEQUENCE 5-like
TrEMBLD5MNY42e-59D5MNY4_SOLLC; Transposon-like element Lyt2.0 DNA
TrEMBLD5MNY52e-59D5MNY5_SOLLC; Transposon-like element Lyt2-1 DNA
STRINGSolyc01g110070.1.12e-58(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.26e-13FAR1 family protein