PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00316g07007.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 361aa MW: 40334 Da PI: 7.6786

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00316g07007.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.5	6.3e-54	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWka Peinf101Scf00316g07007.1 15 LPPGFRFHPTDEELVVHYLKKKAASAPLPV-DIIAEIDLYKFDPWELPAKATFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKA 98 79**************************.99***********988899*************************** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 tg+dk+v+++ ++++vg+kk Lvfy g+ pkg+kt+W+mheyr+ Peinf101Scf00316g07007.1 99 TGTDKPVFTTgGTQKVGVKKALVFYGGKPPKGVKTNWIMHEYRI 142 ****9977788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.48E-65	7	176	IPR003441	NAC domain
PROSITE profile	PS51005	62.069	15	176	IPR003441	NAC domain
Pfam	PF02365	2.8E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009753	Biological Process	response to jasmonic acid
GO:0045995	Biological Process	regulation of embryonic development
GO:0048317	Biological Process	seed morphogenesis
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MESTDSSSGT QQPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVDIIAEI DLYKFDPWEL 60 PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVFTTGG TQKVGVKKAL 120 VFYGGKPPKG VKTNWIMHEY RIAENKTNNK PPGCDVANKK GSLRLDDWVL CRIYKKNNTQ 180 RQVDHESDDM NDMMIGSIPP CIQNSIPSFG TQSHQGLKVS NNYGALLDHE HNLYEGIISN 240 TGDMLNNGSI SQLSSKSQLP INVTSFLPTK RPLPAGLYWS EDNGNSSSTR RFLAEDGDDG 300 LSMNNTTRTD HEQNSSIASL LNQFPQTPTF NQQPQVLGSL TDGVFRQPYN HQVNGMNWPY 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MESTDSSSGT QQPQLPPGFR FHPTDEELVV HYLKKKAASA PLPVDIIAEI DLYKFDPWEL  60
PAKATFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPVFTTGG TQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RIAENKTNNK PPGCDVANKK GSLRLDDWVL CRIYKKNNTQ  180
RQVDHESDDM NDMMIGSIPP CIQNSIPSFG TQSHQGLKVS NNYGALLDHE HNLYEGIISN  240
TGDMLNNGSI SQLSSKSQLP INVTSFLPTK RPLPAGLYWS EDNGNSSSTR RFLAEDGDDG  300
LSMNNTTRTD HEQNSSIASL LNQFPQTPTF NQQPQVLGSL TDGVFRQPYN HQVNGMNWPY  360
S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-75	12	182	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-75	12	182	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-75	12	182	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-75	12	182	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-75	12	182	17	174	NAC domain-containing protein 19
3swm_B	1e-75	12	182	17	174	NAC domain-containing protein 19
3swm_C	1e-75	12	182	17	174	NAC domain-containing protein 19
3swm_D	1e-75	12	182	17	174	NAC domain-containing protein 19
3swp_A	1e-75	12	182	17	174	NAC domain-containing protein 19
3swp_B	1e-75	12	182	17	174	NAC domain-containing protein 19
3swp_C	1e-75	12	182	17	174	NAC domain-containing protein 19
3swp_D	1e-75	12	182	17	174	NAC domain-containing protein 19
4dul_A	1e-75	12	182	14	171	NAC domain-containing protein 19
4dul_B	1e-75	12	182	14	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00361	DAP	Transfer from AT3G15510	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009769986.1	1e-172	PREDICTED: NAC transcription factor 25
Refseq	XP_016484530.1	1e-172	PREDICTED: NAC transcription factor 56-like
Swissprot	Q9LD44	1e-119	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2U9IY25	1e-175	A0A2U9IY25_CATRO; NAC domain containing protein 056
STRING	XP_009769986.1	1e-171	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1814	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-117	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]