PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00330g08001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 120aa    MW: 13482.6 Da    PI: 10.5224
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00330g08001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.11.5e-25959151
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                              +ri+n   rqvtfskR++g+ KKA+EL +LCdaev v ifsstg+lyey+s
  Peinf101Scf00330g08001.1  9 ERIDNPASRQVTFSKRKTGLVKKAKELAILCDAEVGVTIFSSTGRLYEYAS 59
                              69***********************************************86 PP
2K-box40.11.5e-14591103485
                     K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 
                               + R+l+Ge+L+ +s+ +L++Le+qLe  l+++R+ K  l++++  el kk  
  Peinf101Scf00330g08001.1  59 SSRRLKGEELSGMSVSDLRNLENQLEMRLNNVRTEKRALVHQENMELSKKVT 110
                               56********************************************999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.0E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.254161IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-26323IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-26364IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-262338IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.80937120IPR002487Transcription factor, K-box
PRINTSPR004041.9E-263859IPR002100Transcription factor, MADS-box
PfamPF014864.0E-1258110IPR002487Transcription factor, K-box
Gene3DG3DSA:1.10.287.3101.4E-462117IPR001854Ribosomal protein L29
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005634Cellular Componentnucleus
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MARGKIAIER IDNPASRQVT FSKRKTGLVK KAKELAILCD AEVGVTIFSS TGRLYEYASS  60
RRLKGEELSG MSVSDLRNLE NQLEMRLNNV RTEKRALVHQ ENMELSKKVT TAIARIQGCQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-18160160MEF2C
5f28_B3e-18160160MEF2C
5f28_C3e-18160160MEF2C
5f28_D3e-18160160MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608317.12e-53PREDICTED: MADS-box transcription factor 23-like isoform X2
RefseqXP_016491420.12e-53PREDICTED: MADS-box transcription factor 23-like isoform X2
SwissprotQ6EP491e-38MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S4BRA75e-52A0A1S4BRA7_TOBAC; MADS-box transcription factor 23-like isoform X2
STRINGXP_009618485.12e-52(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.16e-41AGAMOUS-like 16
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]