PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00335g03016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family G2-like
Protein Properties Length: 212aa    MW: 23198.1 Da    PI: 5.8773
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00335g03016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like955.6e-3089142155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               +prl+Wtp+LH+rFv+av+++ G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Peinf101Scf00335g03016.1  89 RPRLVWTPQLHKRFVDAVAHI-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 142
                               59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.78E-2086146IPR009057Homeodomain-like
PROSITE profilePS5129410.10486145IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-3088147IPR009057Homeodomain-like
TIGRFAMsTIGR015574.9E-2490142IPR006447Myb domain, plants
PfamPF002493.3E-792141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MREEESNWFA KWEEELPSPE ELMPLSQTLI TPDLAIAFDI QNPNSPIPKT HQTVVNSSAE  60
FEYSADLNGG TAGSGGGGGV DEPARTLKRP RLVWTPQLHK RFVDAVAHIG IKNAVPKTIM  120
QLMSVDGLTR ENVASHLQKY RLYLKRMQQG GHSSNGNSMP DSATDHLFAS SPRMGMSVHS  180
TSPVLPSYVE DLESATAANG RKVLTLFPTV DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-3389145157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055817.12e-86transcription factor MYBC1-like
SwissprotO222102e-59MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A3Q7ILT02e-84A0A3Q7ILT0_SOLLC; Uncharacterized protein
STRINGSolyc10g080960.1.13e-85(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24322354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.16e-61G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]