PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00336g18008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 257aa    MW: 28921.7 Da    PI: 4.4876
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00336g18008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-091443130
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                              rgrWT+eEde+l ++++  G g+W++ ++ 
  Peinf101Scf00336g18008.1 14 RGRWTAEEDEILTKYIHANGEGSWRSLPKN 43
                              8************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-10545IPR009057Homeodomain-like
SuperFamilySSF466894.31E-7843IPR009057Homeodomain-like
PROSITE profilePS512949.717964IPR017930Myb domain
PfamPF002491.9E-61443IPR001005SANT/Myb domain
CDDcd001677.56E-41647No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDEILTKYIH ANGEGSWRSL PKNAAKKGTQ DLNKQRRGRV  60
SRSAMQKNRN NLSSTKGTST ASTLSKPQQP PKENNTISMP STPNIIEKEV LSSTTTSSGQ  120
DANNTHITSD NYASELDNEM LWHEELDPDF IFTCLWNEEG ENLENNNSHN SNTEILSVNV  180
DMVSPGNSKI NETSTLMEDG TTLDWDWQYL SIWAEQEENM SNNNISSRQL SNEALVEIDP  240
VQQVDYNHSE LLAWLLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-44HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-44HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621617.12e-32PREDICTED: transcription factor MYB12-like
TrEMBLA0A1J6J2L63e-27A0A1J6J2L6_NICAT; Transcription factor myb12
STRINGXP_009621617.19e-32(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-23myb domain protein 111