PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00339g02023.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 246aa    MW: 28302.6 Da    PI: 4.5397
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00339g02023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY76.24e-24102163159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                               ++Dgy+WrKYGqK++ +s++pr YYrCt++   +C+++k+v+r +ed  + ++tY g+H ++
  Peinf101Scf00339g02023.1 102 MEDGYAWRKYGQKVILNSKYPRCYYRCTYKynqDCRATKQVQRINEDSIIYQTTYFGHHICK 163
                               58***************************99999*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-2597164IPR003657WRKY domain
PROSITE profilePS5081121.16197160IPR003657WRKY domain
SuperFamilySSF1182901.83E-2499163IPR003657WRKY domain
SMARTSM007744.7E-35102164IPR003657WRKY domain
PfamPF031061.9E-22103163IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MVLESPPTNW KRLIKELVKG KEFAVQLQTL LQQQPLIANH EYSDSSSAHD LILKIWTSFT  60
EAISELTSSS SKGVFQIPEA YSDSIGDRKL SKDFGSEESA VMEDGYAWRK YGQKVILNSK  120
YPRCYYRCTY KYNQDCRATK QVQRINEDSI IYQTTYFGHH ICKESQLQII TSESNLIEES  180
LPFEAKPNVR SDVSDDISSI LDSDLWKDLS MPSSPSAPAL VETLSYFDME EFSKFDDFHF  240
EDIEFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20102163869OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453986.17e-69PREDICTED: probable WRKY transcription factor 70
SwissprotK4BIZ91e-55WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A1S3YNY62e-67A0A1S3YNY6_TOBAC; probable WRKY transcription factor 70
STRINGXP_009793213.13e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-24WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]