PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00345g05019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family HD-ZIP
Protein Properties Length: 194aa    MW: 22095.2 Da    PI: 8.3933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00345g05019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-1847101256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tk q   Lee F+++ +++ ++++eLA++l+L  rqV vWFqNrRa+ k
  Peinf101Scf00345g05019.1  47 RKKLRLTKAQSAFLEESFKQHINLNPKQKQELARELNLRPRQVEVWFQNRRARTK 101
                               678899***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.78E-1933104IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-1741106IPR009057Homeodomain-like
PROSITE profilePS5007117.34643103IPR001356Homeobox domain
SMARTSM003891.4E-1545107IPR001356Homeobox domain
PfamPF000465.2E-1647101IPR001356Homeobox domain
CDDcd000867.17E-1647104No hitNo description
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PfamPF021837.2E-9103137IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.3E-20103146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSFDDICATN LVLGLGSSCA TSSYTNIASV KRERDLSYED DDGSNGRKKL RLTKAQSAFL  60
EESFKQHINL NPKQKQELAR ELNLRPRQVE VWFQNRRART KLKQTEVDCE LLKECCETLK  120
EENMKLQKEL QELKALKLAQ PMYMQLPTPT LITMCPSCQR IGSVGENSSK DHFTMAQKSH  180
FYSSTSFTNP SAAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016486665.12e-89PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466032e-70HAT9_ARATH; Homeobox-leucine zipper protein HAT9
TrEMBLA0A1S4BCK64e-88A0A1S4BCK6_TOBAC; homeobox-leucine zipper protein HAT22-like
STRINGXP_009775231.14e-88(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.13e-48HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]