PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00350g00009.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

YABBY

Protein Properties

Length: 203aa MW: 22877 Da PI: 8.9586

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00350g00009.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	212.3	1.6e-65	8	168	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 +++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt++ +vn+a a q +++ +s + +++++ + e +++ +++ Peinf101Scf00350g00009.1 8 TNTEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTHMWTVNMAAAFQSSTSSPSSLQSHHLHQVANYTSPEYKIDFGSSSK 92 579*****************************************999887777665444445555666666667777666666 PP YABBY 90 esastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +++ v+ +++s+ ++e + v+rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl Peinf101Scf00350g00009.1 93 CNSRMAVRPSHISNPREERI-----VNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 168 66655566556666665555.....59**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.5E-70	9	168	IPR006780	YABBY protein
SuperFamily	SSF47095	6.55E-8	108	161	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.8E-4	116	162	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MTSCIDVTNT EQLCYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCTHMWT VNMAAAFQSS 60 TSSPSSLQSH HLHQVANYTS PEYKIDFGSS SKCNSRMAVR PSHISNPREE RIVNRPPEKR 120 QRVPSAYNQF IKEEIQRIKA NNPDITHREA FSTAAKNWAH FPHIHFGLML ETNNQSKLGA 180 GHENAGKHVM HRPALPKVKT FTF

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009762052.1	1e-123	PREDICTED: axial regulator YABBY 5-like isoform X1
Refseq	XP_016452662.1	1e-123	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	9e-83	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S3YL24	1e-122	A0A1S3YL24_TOBAC; axial regulator YABBY 5-like
TrEMBL	A0A1U7V1C3	1e-122	A0A1U7V1C3_NICSY; axial regulator YABBY 5-like isoform X1
STRING	XP_009762052.1	1e-123	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	7e-82	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]