PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00357g00004.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 456aa MW: 51475.1 Da PI: 4.7069

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00357g00004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	50.4	7.5e-16	7	95	7	98
NAM 7 Fh.PtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 F+ P+d+elv++ L k v+gk++++ + i+ +diy+ +Pw+L ++ ++k yfF++ +kk++t++r +r++ +g W ++ k k++ Peinf101Scf00357g00004.1 7 FRpPSDSELVMK-LLKFVAGKSFPE-TEIAFADIYSKQPWQLIGEC--SKKTHYFFTQLKKKKSTDSRFKRTMGDGSWTQQDKGKPI 89 55279***88.667899999999.66**********8443..66889******************************** PP NAM 93 lskkge 98 l+++++ Peinf101Scf00357g00004.1 90 LDEDEN 95 997655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	13.853	1	154	IPR003441	NAC domain
SuperFamily	SSF101941	3.92E-14	10	124	IPR003441	NAC domain
PRINTS	PR00407	4.8E-16	164	176	IPR008335	Eukaryotic molybdopterin oxidoreductase
Pfam	PF00174	1.7E-12	223	296	IPR000572	Oxidoreductase, molybdopterin-binding domain
Gene3D	G3DSA:3.90.420.10	1.8E-16	224	296	IPR000572	Oxidoreductase, molybdopterin-binding domain
SuperFamily	SSF56524	2.35E-21	224	322	IPR000572	Oxidoreductase, molybdopterin-binding domain
PRINTS	PR00407	4.8E-16	264	277	IPR008335	Eukaryotic molybdopterin oxidoreductase
Pfam	PF03404	1.1E-35	323	450	IPR005066	Moybdenum cofactor oxidoreductase, dimerisation
SuperFamily	SSF81296	1.75E-34	326	451	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:2.60.40.650	2.3E-36	327	451	IPR005066	Moybdenum cofactor oxidoreductase, dimerisation
PRINTS	PR00407	4.8E-16	349	363	IPR008335	Eukaryotic molybdopterin oxidoreductase
PRINTS	PR00407	4.8E-16	363	375	IPR008335	Eukaryotic molybdopterin oxidoreductase
PRINTS	PR00407	4.8E-16	417	429	IPR008335	Eukaryotic molybdopterin oxidoreductase
PRINTS	PR00407	4.8E-16	432	445	IPR008335	Eukaryotic molybdopterin oxidoreductase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042128	Biological Process	nitrate assimilation
GO:0055114	Biological Process	oxidation-reduction process
GO:0003677	Molecular Function	DNA binding
GO:0016491	Molecular Function	oxidoreductase activity
GO:0030151	Molecular Function	molybdenum ion binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MENNLQFRPP SDSELVMKLL KFVAGKSFPE TEIAFADIYS KQPWQLIGEC SKKTHYFFTQ 60 LKKKKSTDSR FKRTMGDGSW TQQDKGKPIL DEDENLEYFL ADFLLNELKS KNNEAKDFVI 120 CAIKKNPRSQ VKGNNVPSDD VNEYKKFIAR VLQESVNVQP LISEQSMVSE TPSASYDVNQ 180 TYSNDLFVEN REFYEEGDWI SLLDFADDDL VPKNCLLSNS GELMAVWGGV KLADVLELVG 240 IPYLTSVTKS GGKHVEFMSI DKCKEENGGP YKASIPLSQA TNSEDDVLLA YEMNGEGFFM 300 QKDYKMFPPT VNWDNINWST RRPQMDFPVQ FAICSLEDVS VVKHGKITIK GYAVSGGGRG 360 IERVDISIDG GKTWVEATRY QRTGIPYIAD DSTSDKWAWV FFEAEANIPQ SAEIVAKAVD 420 ISANVQPESI DSIWNLRGIL NTSWHRVQVR VGQANL

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MENNLQFRPP SDSELVMKLL KFVAGKSFPE TEIAFADIYS KQPWQLIGEC SKKTHYFFTQ  60
LKKKKSTDSR FKRTMGDGSW TQQDKGKPIL DEDENLEYFL ADFLLNELKS KNNEAKDFVI  120
CAIKKNPRSQ VKGNNVPSDD VNEYKKFIAR VLQESVNVQP LISEQSMVSE TPSASYDVNQ  180
TYSNDLFVEN REFYEEGDWI SLLDFADDDL VPKNCLLSNS GELMAVWGGV KLADVLELVG  240
IPYLTSVTKS GGKHVEFMSI DKCKEENGGP YKASIPLSQA TNSEDDVLLA YEMNGEGFFM  300
QKDYKMFPPT VNWDNINWST RRPQMDFPVQ FAICSLEDVS VVKHGKITIK GYAVSGGGRG  360
IERVDISIDG GKTWVEATRY QRTGIPYIAD DSTSDKWAWV FFEAEANIPQ SAEIVAKAVD  420
ISANVQPESI DSIWNLRGIL NTSWHRVQVR VGQANL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ogp_A	1e-123	225	456	125	393	SULFITE OXIDASE
1ogp_B	1e-123	225	456	125	393	SULFITE OXIDASE
1ogp_C	1e-123	225	456	125	393	SULFITE OXIDASE
1ogp_D	1e-123	225	456	125	393	SULFITE OXIDASE
1ogp_E	1e-123	225	456	125	393	SULFITE OXIDASE
1ogp_F	1e-123	225	456	125	393	SULFITE OXIDASE
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably involved in sulfite oxidative detoxification.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF701479	0.0	KF701479.1 Nicotiana tabacum sulfite oxidase (SO) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001275309.1	1e-152	sulfite oxidase-like
Swissprot	Q9S850	1e-123	SUOX_ARATH; Sulfite oxidase
TrEMBL	A0A0V0I822	1e-151	A0A0V0I822_SOLCH; Putative sulfite oxidase-like
TrEMBL	Q2V993	1e-151	Q2V993_SOLTU; Sulfite oxidase-like
STRING	PGSC0003DMT400052064	1e-151	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA25513	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	8e-08	NAC domain containing protein 32

Publications ? help Back to Top
Eilers T, et al. Identification and biochemical characterization of Arabidopsis thaliana sulfite oxidase. A new player in plant sulfur metabolism. J. Biol. Chem., 2001. 276(50): p. 46989-94 [PMID:11598126] Nakamura T,Meyer C,Sano H Molecular cloning and characterization of plant genes encoding novel peroxisomal molybdoenzymes of the sulphite oxidase family. J. Exp. Bot., 2002. 53(375): p. 1833-6 [PMID:12147736] Hille R Plants have SOX: the structure of sulfite oxidase from Arabidopsis thaliana. Structure, 2003. 11(10): p. 1189-90 [PMID:14527382] Schrader N, et al. The crystal structure of plant sulfite oxidase provides insights into sulfite oxidation in plants and animals. Structure, 2003. 11(10): p. 1251-63 [PMID:14527393] Goyer A, et al. Characterization and metabolic function of a peroxisomal sarcosine and pipecolate oxidase from Arabidopsis. J. Biol. Chem., 2004. 279(17): p. 16947-53 [PMID:14766747] Nowak K, et al. Peroxisomal localization of sulfite oxidase separates it from chloroplast-based sulfur assimilation. Plant Cell Physiol., 2004. 45(12): p. 1889-94 [PMID:15653809] Astashkin AV, et al. Structures of the Mo(V) forms of sulfite oxidase from Arabidopsis thaliana by pulsed EPR spectroscopy. Biochemistry, 2005. 44(40): p. 13274-81 [PMID:16201753] Hemann C, et al. Spectroscopic and kinetic studies of Arabidopsis thaliana sulfite oxidase: nature of the redox-active orbital and electronic structure contributions to catalysis. J. Am. Chem. Soc., 2005. 127(47): p. 16567-77 [PMID:16305246] Hänsch R, et al. Plant sulfite oxidase as novel producer of H2O2: combination of enzyme catalysis with a subsequent non-enzymatic reaction step. J. Biol. Chem., 2006. 281(10): p. 6884-8 [PMID:16407262] Lang C, et al. Sulphite oxidase as key enzyme for protecting plants against sulphur dioxide. Plant Cell Environ., 2007. 30(4): p. 447-55 [PMID:17324231] Brychkova G, et al. Sulfite oxidase protects plants against sulfur dioxide toxicity. Plant J., 2007. 50(4): p. 696-709 [PMID:17425719] Feng C,Tollin G,Enemark JH Sulfite oxidizing enzymes. Biochim. Biophys. Acta, 2007. 1774(5): p. 527-39 [PMID:17459792] Hänsch R,Lang C,Rennenberg H,Mendel RR Significance of plant sulfite oxidase. Plant Biol (Stuttg), 2007. 9(5): p. 589-95 [PMID:17853359] Reumann S, et al. Proteome analysis of Arabidopsis leaf peroxisomes reveals novel targeting peptides, metabolic pathways, and defense mechanisms. Plant Cell, 2007. 19(10): p. 3170-93 [PMID:17951448] Xia ZL,Wang MP,Liu QJ Isolation and functional analysis of sulfite oxidase gene AtSO promoter from Arabidopsis thaliana. Zhi Wu Sheng Li Yu Fen Zi Sheng Wu Xue Xue Bao, 2007. 33(5): p. 369-74 [PMID:17960039] Astashkin AV, et al. Direct demonstration of the presence of coordinated sulfate in the reaction pathway of Arabidopsis thaliana sulfite oxidase using 33S labeling and ESEEM spectroscopy. J. Am. Chem. Soc., 2007. 129(47): p. 14800-10 [PMID:17983221] Byrne RS,Hänsch R,Mendel RR,Hille R Oxidative half-reaction of arabidopsis thaliana sulfite oxidase: generation of superoxide by a peroxisomal enzyme. J. Biol. Chem., 2009. 284(51): p. 35479-84 [PMID:19875441] Teschner J, et al. A novel role for Arabidopsis mitochondrial ABC transporter ATM3 in molybdenum cofactor biosynthesis. Plant Cell, 2010. 22(2): p. 468-80 [PMID:20164445] Ahmad A,Sarfraz A Screening and partial immunochemical characterization of sulfite oxidase from plant source. Indian J. Exp. Biol., 2010. 48(1): p. 83-6 [PMID:20358871] Randewig D, et al. Sulfite oxidase controls sulfur metabolism under SO2 exposure in Arabidopsis thaliana. Plant Cell Environ., 2012. 35(1): p. 100-15 [PMID:21895698] Qiu JA,Wilson HL,Rajagopalan KV Structure-based alteration of substrate specificity and catalytic activity of sulfite oxidase from sulfite oxidation to nitrate reduction. Biochemistry, 2012. 51(6): p. 1134-47 [PMID:22263579] Birke H, et al. Cysteine biosynthesis, in concert with a novel mechanism, contributes to sulfide detoxification in mitochondria of Arabidopsis thaliana. Biochem. J., 2012. 445(2): p. 275-83 [PMID:22551219] Hamisch D, et al. Impact of SO(2) on Arabidopsis thaliana transcriptome in wildtype and sulfite oxidase knockout plants analyzed by RNA deep sequencing. New Phytol., 2012. 196(4): p. 1074-85 [PMID:23025405] Yarmolinsky D,Brychkova G,Fluhr R,Sagi M Sulfite reductase protects plants against sulfite toxicity. Plant Physiol., 2013. 161(2): p. 725-43 [PMID:23221833] Birke H,De Kok LJ,Wirtz M,Hell R The role of compartment-specific cysteine synthesis for sulfur homeostasis during H2S exposure in Arabidopsis. Plant Cell Physiol., 2015. 56(2): p. 358-67 [PMID:25416292] Filiz E,Vatansever R,Ozyigit II Insights into a key sulfite scavenger enzyme sulfite oxidase (SOX) gene in plants. Physiol Mol Biol Plants, 2017. 23(2): p. 385-395 [PMID:28461726]