PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00357g04012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 284aa    MW: 31159.4 Da    PI: 6.6943
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00357g04012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260101.96e-324107199
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++
  Peinf101Scf00357g04012.1   4 SCNGCRVLRKGCNENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRMVNPIYGSVGLL 88 
                               6************************************************************************************ PP

                    DUF260  81 lklqqqleqlkaelallke 99 
                               +++++ql+q +ae++l ++
  Peinf101Scf00357g04012.1  89 WSGNWQLCQNAAEAVLKGT 107
                               *************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.7763109IPR004883Lateral organ boundaries, LOB
PfamPF031954.5E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCNENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRMVNP IYGSVGLLWS GNWQLCQNAA EAVLKGTPIT PIASEVAVNN  120
NGPPLKLPYD IRHVNKDDNN VIKSNDLHRV RTRCRFKRSG AKSKKENPIC SGSGDEYGHE  180
KVNGSTSHES SLSHQSEAAA AVGPNVECES REIESLQLQE MAEVDEDLAE AKAGADDGEI  240
ELQLTLGLAP FVTAHDKPKE MKRSEAVNLL DAAGECKMEL WLHC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016436797.11e-172PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8865e-96LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1S3XA611e-171A0A1S3XA61_TOBAC; LOB domain-containing protein 41-like
STRINGXP_009801662.11e-171(Nicotiana sylvestris)
STRINGXP_009607764.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-91LOB domain-containing protein 41