PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00362g01004.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 241aa MW: 26451.3 Da PI: 9.2072

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00362g01004.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.3	9.9e-42	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +CaaCk+lrr+Ca++C+++pyf +p+kfa+vhk+FGasnv+k+l +++e++r da++slvyeA++r+rdPvyG++g i++lqq Peinf101Scf00362g01004.1 52 PCAACKLLRRRCAEECPFSPYFSPLEPQKFAAVHKVFGASNVSKMLMEVSESQRADAANSLVYEANVRLRDPVYGCMGAISALQQ 136 7********************************************************************************** PP DUF260 86 qleqlkaelallkee 100 q+++l+ael+++++e Peinf101Scf00362g01004.1 137 QVQTLQAELNAVRSE 151 *********9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.699	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-41	52	149	IPR004883	Lateral organ boundaries, LOB
PRINTS	PR00049	5.8E-6	134	150	IPR017987	Wilm's tumour protein
PRINTS	PR00049	5.8E-6	184	198	IPR017987	Wilm's tumour protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
LTFAFVNRER LDEIGKKFKK EMDTSTQQLH MQQMGRRHIL GPPGTTLNTI TPCAACKLLR 60 RRCAEECPFS PYFSPLEPQK FAAVHKVFGA SNVSKMLMEV SESQRADAAN SLVYEANVRL 120 RDPVYGCMGA ISALQQQVQT LQAELNAVRS EILRYKYREA ANTLIASTHT TLISTVAELP 180 QAPPTPTPPP PPPPPPPPPP SVVVVVTSSS PSPAPSNLYT PTSRARPNFS AIPNNNIPYF 240 D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-44	45	159	4	118	LOB family transfactor Ramosa2.1
5ly0_B	3e-44	45	159	4	118	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027091064.1	1e-103	LOB domain-containing protein 15-like isoform X1
Swissprot	Q9AT61	8e-77	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A2G2V4N5	1e-103	A0A2G2V4N5_CAPBA; LOB domain-containing protein 15
STRING	Solyc06g082430.1.1	1e-101	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	3e-79	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]