PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00366g02024.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family E2F/DP
Protein Properties Length: 384aa    MW: 42887.5 Da    PI: 5.7229
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00366g02024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP81.95.3e-26120185171
                   E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                               r+++sL+llt+kf++ll+++e+g+++ln+ a+ L   +v   +RRiYDi+NVLe+++liek+ k++irwkg
  Peinf101Scf00366g02024.1 120 RYDNSLGLLTKKFISLLQEAEDGTLDLNHSADVL---EV--AKRRIYDITNVLEGIGLIEKTTKSHIRWKG 185
                               689*******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.0E-27119186IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-16120183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.0E-31120185IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.3E-24122185IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.65E-35196303No hitNo description
SuperFamilySSF1440741.2E-23197302No hitNo description
PfamPF164211.6E-22201300IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MSTASENVEL NLNLNLSLHL PPPPNLPCRR TTAPPFLPIP PPQISANPRV PSTFLYPLKS  60
ENENFKDDSC GYGVSKRSRQ AASARTKQSC KGKASRDAIS AARGINADPL DNLNLGGNYR  120
YDNSLGLLTK KFISLLQEAE DGTLDLNHSA DVLEVAKRRI YDITNVLEGI GLIEKTTKSH  180
IRWKGFEPTR PRGLDNQVSK LKEEIEYLNA EDCRLDNCIR EKLAQIRTLE SDVNCQKSLF  240
LMEEDIMSLP QFKDKTIIAI KAPYASSIEV PDPCEDLHFS ERQYRLMLRS TTGPIDLFLL  300
SKQGRQQEDI TIKHAKPLDA LCGCTEKMDD AYLSAVPPSP LNSTTSKDSG VHRIVPSHAG  360
IDDDYWLRSD QEVSATDLWG VEYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-24120188776PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6539220.0HE653922.1 Nicotiana tabacum mRNA for transcription factor E2FC (E2FC gene), cultivar Samsun nn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613530.10.0PREDICTED: transcription factor E2FC-like
TrEMBLA0A1S3XL480.0A0A1S3XL48_TOBAC; transcription factor E2FC-like
STRINGXP_009613530.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126252022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.26e-82E2F/DP family protein