PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00371g00015.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 326aa MW: 37654.1 Da PI: 6.5097

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00371g00015.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.2	2.6e-39	7	122	1	106
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..........kvka...eekewyfFskrdkkyatg 71 +ppGfrFhPtdeelv++yL+kk++++++e+ +vik++d+yk+ePwdL+ + k e ++wyfFs++dkky+tg Peinf101Scf00371g00015.1 7 VPPGFRFHPTDEELVDYYLRKKITSRRIEV-DVIKDIDLYKIEPWDLQgNaiikafeeyfK--IgpeEVSDWYFFSHKDKKYPTG 88 69**************************.9***********95378887776553..14335569********** PP NAM 72 krknratksgyWkatgkdkevlskkgelvglkktL 106 +r+nrat++g+Wkatg+dk+++s k+ l+g++ktL Peinf101Scf00371g00015.1 89 TRTNRATAAGFWKATGRDKAIYS-KHDLIGMRKTL 122 *******************.8899****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-39	5	134	IPR003441	NAC domain
PROSITE profile	PS51005	34.432	7	162	IPR003441	NAC domain
Pfam	PF02365	3.5E-19	8	123	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MNAFSHVPPG FRFHPTDEEL VDYYLRKKIT SRRIEVDVIK DIDLYKIEPW DLQGNAIIKA 60 FEEYFKIGPE EVSDWYFFSH KDKKYPTGTR TNRATAAGFW KATGRDKAIY SKHDLIGMRK 120 TLEEGWVICR VFKKKIAAMR MDSDHGSPIW YDDHQVSFMH DMDSPKPHPQ STLTSYHYPN 180 YPNCKKELNL QYNQFPPHHH QQFIQIPPLD TSKFLATPQG TSCTSMPVFG INVNQSSVQI 240 QEHMHPMFGN NDKGSANDHV EDQVTDWRVL DKFVASQLSQ EDENNFSNAA NTLHDSNLMV 300 TNSNKEEMAP ENTSTASSSS QIDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-32	6	122	14	118	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	1e-51	HG975445.1 Solanum pennellii chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602844.1	1e-167	PREDICTED: NAC domain-containing protein 7-like
Refseq	XP_016456031.1	1e-167	PREDICTED: NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-101	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A1S3YUR9	1e-166	A0A1S3YUR9_TOBAC; NAC domain-containing protein 7-like
STRING	XP_009602844.1	1e-166	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA134	24	297

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	4e-89	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]