PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00373g21022.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

bHLH

Protein Properties

Length: 388aa MW: 42600.3 Da PI: 5.9376

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00373g21022.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.9	5.5e-16	288	334	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn Er+RRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Peinf101Scf00373g21022.1 288 VHNLSERKRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 334 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	18.012	284	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-20	285	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.09E-17	287	338	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.4E-20	288	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-13	288	334	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-17	290	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MNNHSVPDFE IDDDYPDIHT SSGVTTSKKS STIGGNEDIM EVIWQDGQVV VQSQNERRRH 60 IIPAAGGEEE ETSVTLTGPP VFMQDDEMSS WLQYPLDLDD SSFERDIHLL YTATSTSSVT 120 TAEIRPSPLL PSVGTSVPPL SYQLQNFGHF SRLPGALSHS NNIGNTTTSS SSTHTAARAS 180 TGVDSNETPK LESMVSRVSD SVTPVLHGVG RTATGSTAAA AETSGGTTSG SRSASIEPPP 240 PPAEDRKRKG RETDNDQGHA EDVEFESAYA KKQASSSTST KRFRAAEVHN LSERKRRDRI 300 NEKMKALQEL IPRCNKSDKA SMLDEAIEYL KSLQMQVQVY PFKVFFLNWH LENQVILPRN 360 KNLISCLLLT SSAHLFNLLV RKAFCFVG

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MNNHSVPDFE IDDDYPDIHT SSGVTTSKKS STIGGNEDIM EVIWQDGQVV VQSQNERRRH  60
IIPAAGGEEE ETSVTLTGPP VFMQDDEMSS WLQYPLDLDD SSFERDIHLL YTATSTSSVT  120
TAEIRPSPLL PSVGTSVPPL SYQLQNFGHF SRLPGALSHS NNIGNTTTSS SSTHTAARAS  180
TGVDSNETPK LESMVSRVSD SVTPVLHGVG RTATGSTAAA AETSGGTTSG SRSASIEPPP  240
PPAEDRKRKG RETDNDQGHA EDVEFESAYA KKQASSSTST KRFRAAEVHN LSERKRRDRI  300
NEKMKALQEL IPRCNKSDKA SMLDEAIEYL KSLQMQVQVY PFKVFFLNWH LENQVILPRN  360
KNLISCLLLT SSAHLFNLLV RKAFCFVG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	297	ERKRRD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016488551.1	1e-101	PREDICTED: transcription factor PIF1-like
TrEMBL	A0A1S4BI58	1e-100	A0A1S4BI58_TOBAC; transcription factor PIF1-like
STRING	XP_009597633.1	1e-100	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4059	23	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.3	6e-47	phytochrome interacting factor 3-like 5