PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00384g05015.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 579aa MW: 65490 Da PI: 7.9101

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00384g05015.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.5	4.5e-28	67	153	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 fY+eYAk++GF++++++s++sk+++e+++++f Cs++g + e+++ ++r+ ++++t+Cka+++vk+++dgkw+v+++ +eHn Peinf101Scf00384g05015.1 67 FYQEYAKSMGFTTSIKNSRRSKKSKEFIDAKFACSRYGVTPESDTG---TSRRPSVKKTDCKASMHVKRKRDGKWYVHEFIKEHN 148 **************************************999887...7788899************************* PP FAR1 87 Helap 91 Hel p Peinf101Scf00384g05015.1 149 HELLP 153 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-25	67	153	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.903	276	312	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.6E-6	286	311	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.1E-8	287	314	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 579 aa Download sequence Send to blast
MVDHGDVVQS SLQVIGDMVD AADKAGHNRD GGVARSPKRS TTGVEGNADF EPHDGIEFES 60 HEAAYTFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD TGTSRRPSVK 120 KTDCKASMHV KRKRDGKWYV HEFIKEHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS 180 ERTRKMYVEM SRQCGGNQES RYEEEAVADF DTLHKQPALK SPSPWEKQMS TIYTHAIFKK 240 FQVEVLGVVG CHPKKEGENG ENVTFRVDDC EKDENFMVTW NEARSDVSCS CLLYEYKGFL 300 CRHAMIVLQM CGLSSIPSQY ILKRWTKDAK TRQLMLEGTE KIQTRVQRYN DLCRRAIELG 360 EEGSLCEESY GIAFRVLDEA LKNCVNVNNR SSALTECSNS ALGLRDLEQD IQGIQATRIS 420 RKKNTNKKRK VHSETEAAIV EARGSLQQMV CSLAIYSVLR CILPCPYVPL HDKKCFQSDN 480 LRAGGMPLNG YYGTQQNMQG LVQLNLMEPP HEGYYVNQQN MQGLGQLNTI APSHDGFFGS 540 QQSIPGLGHL DFRQPSFTYG LQDEPLRAAQ LHGDSTRHA

Sequence ? help Back to Top

Protein Sequence Length: 579 aa Download sequence Send to blast

MVDHGDVVQS SLQVIGDMVD AADKAGHNRD GGVARSPKRS TTGVEGNADF EPHDGIEFES  60
HEAAYTFYQE YAKSMGFTTS IKNSRRSKKS KEFIDAKFAC SRYGVTPESD TGTSRRPSVK  120
KTDCKASMHV KRKRDGKWYV HEFIKEHNHE LLPALAYHFR IHRNVKLAEK NNIDILHAVS  180
ERTRKMYVEM SRQCGGNQES RYEEEAVADF DTLHKQPALK SPSPWEKQMS TIYTHAIFKK  240
FQVEVLGVVG CHPKKEGENG ENVTFRVDDC EKDENFMVTW NEARSDVSCS CLLYEYKGFL  300
CRHAMIVLQM CGLSSIPSQY ILKRWTKDAK TRQLMLEGTE KIQTRVQRYN DLCRRAIELG  360
EEGSLCEESY GIAFRVLDEA LKNCVNVNNR SSALTECSNS ALGLRDLEQD IQGIQATRIS  420
RKKNTNKKRK VHSETEAAIV EARGSLQQMV CSLAIYSVLR CILPCPYVPL HDKKCFQSDN  480
LRAGGMPLNG YYGTQQNMQG LVQLNLMEPP HEGYYVNQQN MQGLGQLNTI APSHDGFFGS  540
QQSIPGLGHL DFRQPSFTYG LQDEPLRAAQ LHGDSTRHA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009767065.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_009767066.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_016495821.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495822.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495823.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495824.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495825.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495826.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Refseq	XP_016495827.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X1
Swissprot	Q9SWG3	1e-140	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A2G2X5B3	0.0	A0A2G2X5B3_CAPBA; Protein FAR-RED IMPAIRED RESPONSE 1
STRING	XP_009767065.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-127	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]