PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00400g01006.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

M-type_MADS

Protein Properties

Length: 79aa MW: 9137.78 Da PI: 10.9637

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00400g01006.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.8	2.8e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ks rqv f+kRr+g+lKKA+ELS+LCd++vav+ifs++g+ly++ss Peinf101Scf00400g01006.1 9 KRIEEKSSRQVAFCKRRKGLLKKAKELSILCDVDVAVVIFSNRGRLYDFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.772	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.83E-27	1	66	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.9E-34	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.8E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 79 aa Download sequence Send to blast
MGRKKVEIKR IEEKSSRQVA FCKRRKGLLK KAKELSILCD VDVAVVIFSN RGRLYDFSSN 60 NRYAKAAYDS NKSVIKRLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-17	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-17	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	1e-17	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	1e-17	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	1e-17	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	1e-17	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	1e-17	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	1e-17	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	1e-17	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	1e-17	1	61	1	61	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor (Probable). Is required, together with TT16/AGL32 for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). {ECO:0000269\|PubMed:22176531, ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY370523	7e-87	AY370523.1 Petunia x hybrida MADS-box protein 17 (PMADS17) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009795052.1	2e-32	PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
Refseq	XP_009795053.1	2e-32	PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
Refseq	XP_016435771.1	2e-32	PREDICTED: agamous-like MADS-box protein AGL27 isoform X1
Refseq	XP_016435773.1	2e-32	PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
Swissprot	Q38836	2e-27	AGL11_ARATH; Agamous-like MADS-box protein AGL11
TrEMBL	Q6UGR2	1e-33	Q6UGR2_PETHY; MADS-box protein 17 (Fragment)
STRING	Solyc12g087820.1.1	4e-32	(Solanum lycopersicum)
STRING	XP_009795052.1	9e-32	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09960.2	4e-22	MIKC_MADS family protein

Publications ? help Back to Top
Ezquer I, et al. The Developmental Regulator SEEDSTICK Controls Structural and Mechanical Properties of the Arabidopsis Seed Coat. Plant Cell, 2016. 28(10): p. 2478-2492 [PMID:27624758]