PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00402g00011.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family NF-YC
Protein Properties Length: 257aa    MW: 28926.2 Da    PI: 4.8026
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00402g00011.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC52.88.5e-171752498
                     NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                              arikki++adedv +i+  +P l+ska elf+ +l   ++  + +   +t++   ++++v++ ++fdfl d+v r
  Peinf101Scf00402g00011.1  1 ARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCEHTYDITLKRGAKTMNSFHLKQCVKNFNVFDFLKDVVSR 75
                              7***********************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.5E-23174IPR009072Histone-fold
PfamPF008081.3E-15160IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471133.05E-19776IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
ARIKKIMQAD EDVGKIAMAV PLLVSKALEL FLQDLCEHTY DITLKRGAKT MNSFHLKQCV  60
KNFNVFDFLK DVVSRVPDLG GTESTTKRRK VAEEDGHDTD DDIKRSNVNE SAHTNGSGRG  120
RGRGRGRGRG KCGRALEGES NGKCENFEDH VDVQKQSVKR LHNMTELVDT ENITCGKNPE  180
VPVRNFDLNV DLNESTDPTE ILLEAQPSLS TNPLETKHEE YMGWSPSEME KMAIDPIQFA  240
TLSRRLDEEE EDYDEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-181601574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118130RGRGRGRGRGRGK
2120129RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019236573.11e-94PREDICTED: dr1-associated corepressor-like isoform X1
TrEMBLA0A1J6KDL33e-93A0A1J6KDL3_NICAT; Uncharacterized protein
STRINGXP_009607736.12e-96(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19490.16e-52NF-YC family protein