PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00408g13001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 207aa MW: 23635.8 Da PI: 4.237

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00408g13001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.7	2.6e-08	34	64	1	31
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 rg+WT eEd l++ ++++G g+W++ ar Peinf101Scf00408g13001.1 34 RGSWTVEEDFTLINHIALHGEGRWNSLARSA 64 89**************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-9	28	63	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.4E-8	29	72	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.992	29	68	IPR017877	Myb-like domain
Pfam	PF00249	2.2E-6	34	63	IPR001005	SANT/Myb domain
CDD	cd00167	4.85E-5	36	62	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MDHQHAKVDL RSKEAACSVN NIQKVEEDDM DFKRGSWTVE EDFTLINHIA LHGEGRWNSL 60 ARSADTLRYL WMPRLVERIQ ASNSSKNQVI QQTSNNNISN NNIIPSMSFT QENSSTTTSS 120 ENSLGTQVIS QVSDTSDCCY NYCTINQNDT LCYGESLTSP TGYFHQEGAL DFRTVDIDDS 180 KLNNQFLDVS DNLWNIEDMW FLQEQLN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009799769.1	9e-44	PREDICTED: transcription factor MYB108-like, partial
Refseq	XP_009799770.1	2e-43	PREDICTED: transcription factor MYB108-like
Refseq	XP_016494481.1	2e-43	PREDICTED: transcription factor MYB108-like
TrEMBL	A0A1S4C005	5e-42	A0A1S4C005_TOBAC; transcription factor MYB108-like
TrEMBL	A0A1U7YKK3	2e-42	A0A1U7YKK3_NICSY; transcription factor MYB108-like
TrEMBL	A0A1U7YLQ8	5e-42	A0A1U7YLQ8_NICSY; transcription factor MYB108-like
STRING	XP_009799769.1	4e-43	(Nicotiana sylvestris)
STRING	XP_009799770.1	8e-43	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	1e-14	myb domain protein 78