PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00415g10023.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MYB_related
Protein Properties Length: 249aa    MW: 27662.1 Da    PI: 7.7207
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00415g10023.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-144085247
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               rWT++E+ l++ + + +G+g+W++I+++    Rt+ q+ s+ qk+
  Peinf101Scf00415g10023.1 40 SRWTEDEHRLFLSGLRIHGKGNWAKISKHCLPSRTPQQIASHAQKH 85
                              59*************************99777************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.2833490IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-123885IPR009057Homeodomain-like
SuperFamilySSF466898.61E-153890IPR009057Homeodomain-like
SMARTSM007171.6E-113888IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.8E-113988IPR006447Myb domain, plants
PfamPF002493.0E-124185IPR001005SANT/Myb domain
CDDcd001671.07E-124186No hitNo description
SuperFamilySSF530675.18E-12207248No hitNo description
PfamPF000224.4E-11208247IPR004000Actin family
Gene3DG3DSA:3.30.420.406.9E-12209247No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MGRNNMCREK GKKIKLFGVT ISTTDTTDSA NHGRKITKGS RWTEDEHRLF LSGLRIHGKG  60
NWAKISKHCL PSRTPQQIAS HAQKHFIKIA ETNERRRRNK PSVFDLNLEE TSAEEVLEEN  120
KNVGCEHAIV VFKNQEHDDS SVTLENQEHD ANIVPLETAS AEVVTPIAAI PAATSQYQSF  180
VIPSYSMVQV SAGGGTRVPV SWMVDWEYIQ PIVIDNGTET SKVGYAGDDS PRTVFPSIVG  240
RPRHTGVMV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3a5l_C5e-14205249145Major actin
3a5m_C5e-14205249145Major actin
3a5n_C5e-14205249145Major actin
3a5o_C5e-14205249145Major actin
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74541230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-19MYB family protein