PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00416g03019.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WRKY
Protein Properties Length: 173aa    MW: 19808.8 Da    PI: 6.7891
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00416g03019.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.6e-31110168159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                      WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                               ldDgy+WrKYG+K+vk+s++pr+YYrC+ +gCpvkk+ver++ed ++v++tYeg Hnh+
  Peinf101Scf00416g03019.1 110 LDDGYKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDKEDHRYVITTYEGVHNHQ 168
                               59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-3396170IPR003657WRKY domain
SuperFamilySSF1182901.57E-28103170IPR003657WRKY domain
PROSITE profilePS5081131.514105170IPR003657WRKY domain
SMARTSM007743.4E-35110169IPR003657WRKY domain
PfamPF031063.5E-24111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
STMAANNPST NMSDGSFRSM DSPDSDFSNQ LINFELSDIF EIDNWPVQED PSFVFSGPPQ  60
YPNYAANEVV STKRSRSYNE GPSNNIGSSS ERKEVKDKVA FKTLSQIEIL DDGYKWRKYG  120
KKMVKNSPNP RNYYRCSVEG CPVKKRVERD KEDHRYVITT YEGVHNHQGP SQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-25100171778Probable WRKY transcription factor 4
2lex_A3e-25100171778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00531DAPTransfer from AT5G26170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8712800.0AJ871280.1 Nicotiana tabacum mRNA for putative WRKY transcription factor 10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019257931.11e-112PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A1J6I5U11e-111A0A1J6I5U1_NICAT; Putative wrky transcription factor 50
STRINGXP_009789246.11e-110(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.11e-40WRKY DNA-binding protein 50