PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00416g20010.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

HB-other

Protein Properties

Length: 331aa MW: 37539.1 Da PI: 4.5273

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00416g20010.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.2	3.9e-10	269	316	6	53
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 +++k qle+Le+++++++ p+ +++ + + ++L+ ++V WF rR Peinf101Scf00416g20010.1 269 RIKKVQLETLEQVYRRSKRPTNAMISSIVHVTNLPRKRVLKWFEDRRS 316 68899******************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.025	261	321	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-10	263	323	IPR009057	Homeodomain-like
CDD	cd00086	2.64E-7	264	315	No hit	No description
SMART	SM00389	1.7E-4	267	325	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.0E-9	269	318	IPR009057	Homeodomain-like
Pfam	PF00046	1.1E-7	269	316	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002229	Biological Process	defense response to oomycetes
GO:0009414	Biological Process	response to water deprivation
GO:0009682	Biological Process	induced systemic resistance
GO:0009787	Biological Process	regulation of abscisic acid-activated signaling pathway
GO:0010118	Biological Process	stomatal movement
GO:0050832	Biological Process	defense response to fungus
GO:2000022	Biological Process	regulation of jasmonic acid mediated signaling pathway
GO:2000071	Biological Process	regulation of defense response by callose deposition
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MATASTTLRI SITLQCSSND NFPKRSTILP IHSSSSSSGT SSSVLTFSRR RNNSANSPIT 60 SSKKTKKSSP IKDNKEEDDI DEDAFEALFQ LLEEDLKNDE LALDDDDISE EDLAKLEREL 120 EEALKDDELL GAIGNIAGEE IENDTEDEEG VVEDDNEEEE EELPVNLKNW QLKKLAYALR 180 KGRRKTNIKN LAADLCLDRA VVLELLRNPP MNLLMLSEAL PDEPVPRMIE PESRPLETFP 240 IEISDVPKTE AKVETPVHVM QSSWSAQKRI KKVQLETLEQ VYRRSKRPTN AMISSIVHVT 300 NLPRKRVLKW FEDRRSEEGV PDRRVPYQPS S

Functional Description ? help Back to Top
Source	Description
UniProt	May modulate chromatin structure by regulation of nucleosome assembly/disassembly (By similarity). Homeodomain transcription factor that mediates jasmonic acid (JA)-mediated COI1-dependent and abscisic acid (ABA)-mediated PMR4-dependent resistance to infection by necrotrophic fungal pathogens (e.g. B.cinerea and P.cucumerina) and bacterial pathogens (e.g. P.syringae DC3000); this resistance involves at least callose deposition (PubMed:15923348, PubMed:20836879, PubMed:21564353). Required for the P.fluorescens WCS417r-triggered JA-dependent induced systemic resistance (ISR) against both P.syringae DC3000 and H.arabidopsidis (PubMed:20836879). Negative regulator of the ABA-dependent drought resistance (PubMed:19175769). {ECO:0000250\|UniProtKB:Q70Z19, ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769, ECO:0000269\|PubMed:20836879, ECO:0000269\|PubMed:21564353}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Constitutively expressed in healthy plants but repressed in response to infection by necrotrophic fungi (PubMed:15923348). Repressed by drought and abscisic acid (ABA) (PubMed:19175769). {ECO:0000269\|PubMed:15923348, ECO:0000269\|PubMed:19175769}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	3e-77	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015085680.1	1e-164	protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Swissprot	Q8H0V5	1e-74	OCP3_ARATH; Protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	M1BV57	1e-162	M1BV57_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400053577	1e-163	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9428	23	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	3e-60	overexpressor of cationic peroxidase 3

Publications ? help Back to Top
García-Andrade J,Ramírez V,López A,Vera P Mediated plastid RNA editing in plant immunity. PLoS Pathog., 2013. 9(10): p. e1003713 [PMID:24204264] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gamir J,Pastor V,Kaever A,Cerezo M,Flors V Targeting novel chemical and constitutive primed metabolites against Plectosphaerella cucumerina. Plant J., 2014. 78(2): p. 227-40 [PMID:24506441]