PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00421g16012.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family FAR1
Protein Properties Length: 468aa    MW: 54170.8 Da    PI: 10.1906
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00421g16012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.35.5e-281197190
                      FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87
                              kfY +YA++ GFsvrk++ ++s+++++i+ ++fvCskeg+r++++++   ++++r etr gCk ++ ++k+++gkw++++l   HnH
  Peinf101Scf00421g16012.1 11 KFYLDYAHRSGFSVRKNRISRSRKDKSIIGQEFVCSKEGFRSKKSNE---SSQQRDETREGCKVMMYLSKKEEGKWVIARLIPCHNH 94
                              6*****************************************99877...999********************************** PP

                      FAR1 88 ela 90
                              ela
  Peinf101Scf00421g16012.1 95 ELA 97
                              *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-251197IPR004330FAR1 DNA binding domain
PfamPF044341.2E-7215250IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.954215251IPR007527Zinc finger, SWIM-type
SMARTSM005757.5E-4226253IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MEFQSLDNAF KFYLDYAHRS GFSVRKNRIS RSRKDKSIIG QEFVCSKEGF RSKKSNESSQ  60
QRDETREGCK VMMYLSKKEE GKWVIARLIP CHNHELASPH SQKFLRSKRK KSDAQKNLID  120
LLDTSGVRPT QYDKAVDARY DKVREKDFKT KDSKAKLKTL YPMEDEAAKV YTRKMFKIFQ  180
EELTMSQKFV SKKIEVKDGM RIYKVHEFQQ QKQEYIVRLN LELKNAVCSC HKFEFMGILC  240
RHVLMVFIKK QIHSLPPCYL LDRWTIFATK EKFVEVSHEQ HNVKPSTVWF NNIMVHSLGI  300
SERATRSGKH YKFAYQKLLQ LSKELDELPY EFEDVNVCDG QVNESNVELN LGEQSQNVTL  360
LDPPRAATKG RPRSLRMKGG LESSRTAKKN SSQKQKGQTR STKKGQGTSS SSKAEVESRS  420
TETLLRAAPA MQFQSYSGSQ GQNDNGSGYP TSFTDLMKTT SYPYRQNF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025883762.11e-157protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025886302.11e-153protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3Q7EY021e-160A0A3Q7EY02_SOLLC; Uncharacterized protein
STRINGSolyc01g110070.1.11e-162(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA645860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-28FAR1-related sequence 5