PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00422g03005.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family DBB
Protein Properties Length: 306aa    MW: 33942 Da    PI: 6.9574
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00422g03005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.65.4e-08443538
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                               C+ ++++e++lfC  ++  lCe+C    H+       H+
  Peinf101Scf00422g03005.1  4 QCDVCNNNEASLFCVADEAALCESCDHRVHHAnklagkHQ 43
                              7**************************9964446777776 PP
2zf-B_box29.91.1e-095492238
                  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                              + + C+ ++e ++ lfC++++  lC++C  ++Hk   Ht
  Peinf101Scf00422g03005.1 54 QVPLCDICQERRALLFCQQDRAILCRECDISIHKAneHT 92
                              6789*****************************878865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.921147IPR000315B-box-type zinc finger
CDDcd000219.59E-8347No hitNo description
SMARTSM003361.1E-8447IPR000315B-box-type zinc finger
PfamPF006432.3E-6444IPR000315B-box-type zinc finger
SMARTSM003361.7E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.55253100IPR000315B-box-type zinc finger
PfamPF006435.4E-85492IPR000315B-box-type zinc finger
CDDcd000219.11E-1256100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MKIQCDVCNN NEASLFCVAD EAALCESCDH RVHHANKLAG KHQRFSLLQP SSKQVPLCDI  60
CQERRALLFC QQDRAILCRE CDISIHKANE HTQKHNRFLL TGVKLSANSS LYSPSVTSST  120
NSLTTNQDSA PNLKSQNSTK MPLQLPISVS VSSNISQEFA VAANDKGNSC QLMNLGGNNS  180
TSSISEYLEM LPGWHVEEFL NSSSIPNGFC KIGDNDVFPI WDTEIESNLS SFSPESIGTW  240
VPQAPAIATP QQYHTQNLNF GGQIEFKNIK EVTSIKSSRK WRDDNSFAVP QISPPSTSFK  300
RSRTLW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009780919.10.0PREDICTED: probable salt tolerance-like protein At1g75540
RefseqXP_016458633.10.0PREDICTED: B-box zinc finger protein 21-like
SwissprotQ9LQZ76e-89BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A1S3Z2M70.0A0A1S3Z2M7_TOBAC; B-box zinc finger protein 21-like
TrEMBLA0A1U7X2180.0A0A1U7X218_NICSY; probable salt tolerance-like protein At1g75540
STRINGXP_009780919.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14632364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-86salt tolerance homolog2
Publications ? help Back to Top
  1. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  2. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  3. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  4. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  5. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  6. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]