PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00427g00008.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 348aa    MW: 39396.7 Da    PI: 6.833
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00427g00008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS143.12.9e-44152052203
                      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                               ++lL++cA+a+++++l + + l+++          ++  l+ay+ e+L ar   s++++y+al+++e++    ++ ++++ +++e
  Peinf101Scf00427g00008.1  15 KQLLIACADALAENKLDEFELLITK---------GSVLVLTAYIIEGLVARKEASGTNIYRALRCKESA---GKDLFSYMYILYE 87 
                               6778888887777777766666554.........4555699***************************9...99999999***** PP

                      GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfA 169
                               ++P+lk ++++aN aI ea  +e+++HiiDf+i qG+QW++LlqaL + p+g+p +RiTg+++p s+  + + l ++++r++ f 
  Peinf101Scf00427g00008.1  88 ICPYLKCGYMAANGAIAEACRNEDHIHIIDFQIAQGTQWMTLLQALDASPGGAPYVRITGIDDPVSQyaRGDGLTAVAKRISAFS 172
                               ****************************************************************999999*************** PP

                      GRAS 170 eelgvpfefnvlvakrledleleeLrvkpgEala 203
                               e++++++ef++ +     ++++++L+v+pg ala
  Peinf101Scf00427g00008.1 173 EKFNIDVEFHL-MPVFAPEVTMDMLDVRPGKALA 205
                               **********9.7888999***********9998 PP
2GRAS121.11.4e-37223344247369
                      GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                               ++ +++F+ r+leal+y+ a+f+ ++++l+r+ +eri+vE++ l+r+ivnv+aceg+er+erhe ++kW++r+++aGF+++p+s+
  Peinf101Scf00427g00008.1 223 KYKHAPFFPRVLEALDYCHAMFEPIDVTLARDRQERINVEQHSLARDIVNVIACEGKERVERHELFGKWKSRFMMAGFRQYPVSS 307
                               56789******************************************************************************** PP

                      GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369
                               ++++ +k+l+r ++ + y++ e++g+++l Wk+r+L  
  Peinf101Scf00427g00008.1 308 FMNSMIKSLMRCYS-KHYTLVEKDGAMLLRWKQRNLCI 344
                               **********9998.55******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.2941330IPR005202Transcription factor GRAS
PfamPF035141.0E-4115205IPR005202Transcription factor GRAS
PfamPF035144.8E-35223344IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEDLPLQGVH SINLKQLLIA CADALAENKL DEFELLITKG SVLVLTAYII EGLVARKEAS  60
GTNIYRALRC KESAGKDLFS YMYILYEICP YLKCGYMAAN GAIAEACRNE DHIHIIDFQI  120
AQGTQWMTLL QALDASPGGA PYVRITGIDD PVSQYARGDG LTAVAKRISA FSEKFNIDVE  180
FHLMPVFAPE VTMDMLDVRP GKALAYDEVA FPQDSHFGGA RIKYKHAPFF PRVLEALDYC  240
HAMFEPIDVT LARDRQERIN VEQHSLARDI VNVIACEGKE RVERHELFGK WKSRFMMAGF  300
RQYPVSSFMN SMIKSLMRCY SKHYTLVEKD GAMLLRWKQR NLCICLAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-352134726377Protein SCARECROW
5b3h_A2e-352134725376Protein SCARECROW
5b3h_D2e-352134725376Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363507.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG11e-134CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLM1BYZ50.0M1BYZ5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000561200.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-116GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]