PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00434g07017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28389.1 Da    PI: 9.9975
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00434g07017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.31.5e-312574150
                              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Peinf101Scf00434g07017.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 74
                              79***********************************************8 PP
2K-box108.86.2e-36921893100
                     K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                               ++s+ s++ea+++++qqe+akL+++i+ +q+ +R+++Ge L+sLs ++L++Le +Lek++ ++RskKnell+++ie +qk+e e+
  Peinf101Scf00434g07017.1  92 STSTGSVSEANTQYYQQEAAKLRRQIRDIQTYNRQIVGEALSSLSPRDLKNLEGKLEKAIGRVRSKKNELLFSEIELMQKREIEM 176
                               4556669****************************************************************************** PP

                     K-box  88 qeenkaLrkklee 100
                               q++n++Lr+k++e
  Peinf101Scf00434g07017.1 177 QNANMYLRAKIAE 189
                               **********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.2631777IPR002100Transcription factor, MADS-box
SMARTSM004321.1E-401776IPR002100Transcription factor, MADS-box
CDDcd002657.65E-461894No hitNo description
SuperFamilySSF554552.22E-331893IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-331939IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001973IPR002100Transcription factor, MADS-box
PfamPF003199.3E-272673IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-333954IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-335475IPR002100Transcription factor, MADS-box
PfamPF014861.4E-25101187IPR002487Transcription factor, K-box
PROSITE profilePS5129714.572103193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVFPNQEFES SSSQRKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSSRGRL YEYANNSVRA TIDRYKKHHA DSTSTGSVSE ANTQYYQQEA AKLRRQIRDI  120
QTYNRQIVGE ALSSLSPRDL KNLEGKLEKA IGRVRSKKNE LLFSEIELMQ KREIEMQNAN  180
MYLRAKIAEV ERATQQMNLM PGGGSEYQQQ PMSSTSQPYD ARNFLPVNLL EPNPHYSRQD  240
QTALQLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A1e-2018102188Myocyte-specific enhancer factor 2A
3kov_B1e-2018102188Myocyte-specific enhancer factor 2A
3kov_I1e-2018102188Myocyte-specific enhancer factor 2A
3kov_J1e-2018102188Myocyte-specific enhancer factor 2A
3p57_A1e-2018102188Myocyte-specific enhancer factor 2A
3p57_B1e-2018102188Myocyte-specific enhancer factor 2A
3p57_C1e-2018102188Myocyte-specific enhancer factor 2A
3p57_D1e-2018102188Myocyte-specific enhancer factor 2A
3p57_I1e-2018102188Myocyte-specific enhancer factor 2A
3p57_J1e-2018102188Myocyte-specific enhancer factor 2A
5f28_A2e-2018102289MEF2C
5f28_B2e-2018102289MEF2C
5f28_C2e-2018102289MEF2C
5f28_D2e-2018102289MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPETFHPP0.0L33973.1 Petunia inflata (clone L3C1) agamous protein homologue (PAGL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612079.11e-166PREDICTED: floral homeotic protein AGAMOUS isoform X2
RefseqXP_016471057.11e-166PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
SwissprotQ93XH41e-128MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLQ409000.0Q40900_PETIN; Agamous protein
STRINGXP_009612078.11e-163(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-111MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]