PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00437g11001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

MYB_related

Protein Properties

Length: 180aa MW: 21107.8 Da PI: 4.663

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00437g11001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.2	1e-19	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll+++v+++G g+W+++ar g++R +k+c++rw +yl Peinf101Scf00437g11001.1 17 KGPWTAEEDRLLIEYVNLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 64 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-23	12	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.747	12	68	IPR017930	Myb domain
SMART	SM00717	3.7E-17	16	66	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-18	17	64	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.38E-23	18	91	IPR009057	Homeodomain-like
CDD	cd00167	6.01E-13	19	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-6	68	90	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MAEQMGNWGV IEEEWRKGPW TAEEDRLLIE YVNLHGEGRW NSVARLAGLK RNGKSCRLRW 60 VNYLRPDLKR GQITPYEERI ILELHAIWGN YENEVPILPQ RKQEMDFMYQ NTTEQEQGGG 120 FFYTMLNGYA TVPVPEVSSN EDMIMWDHGL WNLEDFNANF NTAAYNKTPP CLQPLATPFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-15	17	113	7	103	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	1e-37	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015075842.1	3e-63	myb-related protein 305-like
Swissprot	P81391	3e-34	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A2G3CHY1	2e-62	A0A2G3CHY1_CAPCH; Myb-related protein
STRING	PGSC0003DMT400069955	9e-54	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA17516	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24310.1	6e-49	myb domain protein 305

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]