PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00438g00002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 209aa    MW: 24584.8 Da    PI: 5.0151
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00438g00002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS104.61.4e-3273207220354
                      GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                               ++s+rd+vL+l+++++P+v+ +   +  +ns+ F+++f eal ++s+lfd++ea++ re++er  + ++++g+ei+n++ace+++
  Peinf101Scf00438g00002.1  73 QNSPRDDVLRLIRQIKPDVFLHGIVNGTYNSSFFVTKFKEALFHFSSLFDMMEATILRENQERLLYKKVIFGKEIMNILACENTA 157
                               45699******************************************************************************** PP

                      GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                               r+er e +++ + r ++aGF+++pl+++++k++k+ +r  + + + v+e+
  Peinf101Scf00438g00002.1 158 RVERPEPYKQQQLRNRRAGFQQLPLNQDIMKEVKAKVRWRYHKDFFVDED 207
                               *************************************9999777988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098519.41207IPR005202Transcription factor GRAS
PfamPF035144.8E-3073207IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MLMEEEDLEN RPCMLQDSLA LQAAEKVFYD ALVDCQSFSS GLESSQFQAH FASDDDEYGK  60
LADYPSSSFE KYQNSPRDDV LRLIRQIKPD VFLHGIVNGT YNSSFFVTKF KEALFHFSSL  120
FDMMEATILR ENQERLLYKK VIFGKEIMNI LACENTARVE RPEPYKQQQL RNRRAGFQQL  180
PLNQDIMKEV KAKVRWRYHK DFFVDEDCN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165701.12e-71PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 9
RefseqXP_016576235.13e-71PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 14
SwissprotP0C8833e-47SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A1U8GYR07e-70A0A1U8GYR0_CAPAN; LOW QUALITY PROTEIN: scarecrow-like protein 14
STRINGcassava4.1_002718m3e-59(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1748644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-49GRAS family protein