PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00452g10023.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

FAR1

Protein Properties

Length: 160aa MW: 18384.1 Da PI: 10.4508

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00452g10023.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	38.9	2.9e-12	11	83	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY +YA++ Fsvr+ + +ksk++++i+ ++fvCskeg+ ++++ k + k+ kek +kw v +l+++HnH Peinf101Scf00452g10023.1 11 NFYLDYAHRNDFSVRRGRVTKSKKDKSIIGQEFVCSKEGFCSKKNLK-----------------NHKIYKEKVAKWAVCRLVSNHNH 80 6***************************************9998877.................23466677889999999999999 PP FAR1 88 ela 90 ela Peinf101Scf00452g10023.1 81 ELA 83 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.8E-9	11	57	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MEFSSLDDSF NFYLDYAHRN DFSVRRGRVT KSKKDKSIIG QEFVCSKEGF CSKKNLKNHK 60 IYKEKVAKWA VCRLVSNHNH ELATPHSKKF LRSKRKKSEA LKNLIDLLDD SGVRPGKIAS 120 VLMNQAVGID QLNLTGQDIQ NYLRTRRQQN LEKGDAQLIG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015167012.1	3e-75	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A3Q7EE03	4e-66	A0A3Q7EE03_SOLLC; Uncharacterized protein
TrEMBL	A0A3Q7ETW6	1e-66	A0A3Q7ETW6_SOLLC; Uncharacterized protein
TrEMBL	D5MNY6	1e-66	D5MNY6_SOLLC; Transposon-like element Lyt2-2 DNA
STRING	Solyc01g110070.1.1	6e-38	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-21	FAR1-related sequence 5