PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00457g01002.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C2H2
Protein Properties Length: 225aa    MW: 25545.3 Da    PI: 6.3966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00457g01002.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-056890123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              y+C+ C++ Fs+   L  H++ H
  Peinf101Scf00457g01002.1 68 YRCSFCKRGFSNAQALGGHMNIH 90
                              9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.63E-66694No hitNo description
Gene3DG3DSA:3.30.160.603.8E-46692IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4686895IPR007087Zinc finger, C2H2
SMARTSM003550.00536890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MLALFLSIIK LSFFADHDLF SILFHLFLLS HLILPFNSME IDPSVSAKSN QIITWRSEEL  60
GLGNVRFYRC SFCKRGFSNA QALGGHMNIH RKDRARLKEI SSDNLLSLDI NNSFNPPPPI  120
LALAPTNEDS SQREVSYDVT ISSPSKRLCV TSEESDRPTT KVNHDYKHEV IIQDLSQLPL  180
FKETPLIKED RQVVATKDMQ LNLVSELDLE LRLGLEPSNF SMKAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454746.13e-79PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A1S3YRA17e-78A0A1S3YRA1_TOBAC; probable transcriptional regulator RABBIT EARS
STRINGXP_009596834.14e-77(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-15C2H2 family protein