PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00463g02009.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family S1Fa-like
Protein Properties Length: 88aa    MW: 9913.84 Da    PI: 10.5497
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00463g02009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA124.43.6e-392288470
                      S1FA  4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                              + ve+kG++PGlivl vv+glll fl gny+ly+yaqk+lPP+kkkPvskkklkre+lkqGv++PGe
  Peinf101Scf00463g02009.1 22 KDVEVKGFDPGLIVLSVVSGLLLAFLFGNYLLYMYAQKTLPPKKKKPVSKKKLKRERLKQGVSAPGE 88
                              679***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046891.4E-372488IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MESKENFYVV ALHSFPQKNM AKDVEVKGFD PGLIVLSVVS GLLLAFLFGN YLLYMYAQKT  60
LPPKKKKPVS KKKLKRERLK QGVSAPGE
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009627553.15e-25PREDICTED: DNA-binding protein S1FA-like
RefseqXP_009781429.15e-25PREDICTED: DNA-binding protein S1FA-like
RefseqXP_010104121.27e-25DNA-binding protein S1FA
RefseqXP_016432997.15e-25PREDICTED: DNA-binding protein S1FA-like
RefseqXP_016471310.15e-25PREDICTED: DNA-binding protein S1FA-like
RefseqXP_024026346.17e-25DNA-binding protein S1FA
SwissprotP425533e-13S1FA1_ORYSJ; DNA-binding protein S1FA1
TrEMBLW9SCA37e-24W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.11e-24(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249