PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00468g03017.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family MIKC_MADS
Protein Properties Length: 209aa    MW: 24099.3 Da    PI: 9.3346
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00468g03017.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.3e-281058250
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                              ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgklye+ 
  Peinf101Scf00468g03017.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTGKLYEFT 58
                              8***********************************************7 PP
2K-box15.86e-0778115946
                     K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesL 46 
                               + ++  ++l++e++  +++++ Lq+++R+llGe+L  L
  Peinf101Scf00468g03017.1  78 QLHNPVSELKREAEISRQQLQDLQENHRQLLGEELCGL 115
                               4445567899999999******************9766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.833161IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-39160IPR002100Transcription factor, MADS-box
CDDcd002656.79E-45278No hitNo description
SuperFamilySSF554551.12E-32281IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003199.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-283859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TGKLYEFTNT  60
SMKSVIERYN KTKDEHQQLH NPVSELKREA EISRQQLQDL QENHRQLLGE ELCGLGEQLL  120
KDEIQELTRK GTMIHQENLE LYKKVNLIQQ ENAELYKKAY GTRDSNAMSG NTNSPYRFTV  180
SREVHGPIHL QLSQPEPQNF ETRARISDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-21183183MEF2 CHIMERA
6bz1_B3e-21183183MEF2 CHIMERA
6bz1_C3e-21183183MEF2 CHIMERA
6bz1_D3e-21183183MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754416e-59HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016445758.11e-133PREDICTED: MADS-box transcription factor 23-like isoform X1
SwissprotQ6EP494e-85MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S3Y0N11e-131A0A1S3Y0N1_TOBAC; MADS-box transcription factor 23-like isoform X1
STRINGXP_009786108.11e-132(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.13e-71AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]