PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00468g09010.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family bHLH
Protein Properties Length: 320aa    MW: 35802.1 Da    PI: 6.797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00468g09010.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.84.1e-13131178355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h  +Er+RR+r+ ++f  + +llP++     kKl+Ka++L  A++YIk+L+
  Peinf101Scf00468g09010.1 131 QDHVLAERKRRERLTQRFIAISTLLPNL-----KKLDKASVLGDAIKYIKQLE 178
                               56999***********************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.421128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-11131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-16132193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.08E-13133182No hitNo description
SuperFamilySSF474593.01E-16133195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-14134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MDISSATWWS EMETTDMNNH SFINSNNQMM MTPFNELSFS KPQGTHHKTT FCYSNSPSAN  60
TSTVAKNVHY EKLNTFVKTE VPSGTTINFS SSTSLDSDFG DIQNQIQSFG FGTGDTNTQK  120
KSYSRSGLQA QDHVLAERKR RERLTQRFIA ISTLLPNLKK LDKASVLGDA IKYIKQLEEQ  180
VKTLEEKAKN CKEEPVVAVK RARFISSYED SSSSGENSSI STDTSLPDIE VRASDGNIMI  240
TIYCQKQTGI LKEIFNEVEK LHLSISSSSV MPFGYATTHI TIIAQMDHQF SMTPNHVANR  300
IRAAMTKLIN NLDEDSFVTA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13132194873Transcription factor MYC2
5gnj_B6e-13132194873Transcription factor MYC2
5gnj_E6e-13132194873Transcription factor MYC2
5gnj_F6e-13132194873Transcription factor MYC2
5gnj_G6e-13132194873Transcription factor MYC2
5gnj_I6e-13132194873Transcription factor MYC2
5gnj_M6e-13132194873Transcription factor MYC2
5gnj_N6e-13132194873Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507543.11e-152PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4D2J21e-151A0A1S4D2J2_TOBAC; transcription factor bHLH18-like
STRINGXP_009594425.11e-151(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-51bHLH family protein