PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00469g00003.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family LBD
Protein Properties Length: 314aa    MW: 35349.8 Da    PI: 7.3687
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00469g00003.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260137.16.5e-43251241100
                    DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                               +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq+
  Peinf101Scf00469g00003.1  25 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEYRLRDPVYGCVGLISILQH 109
                               7************************************************************************************ PP

                    DUF260  86 qleqlkaelallkee 100
                               +l+q + +l  +k+e
  Peinf101Scf00469g00003.1 110 KLKQIQDDLLNAKKE 124
                               *******99888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.69124125IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4225121IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009954Biological Processproximal/distal pattern formation
GO:0009965Biological Processleaf morphogenesis
GO:0048441Biological Processpetal development
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQAKGCHSFL YTTKARPKMS SSNSPCAACK FLRRKCTQEC VFAPYFPPDQ PQKFANVHKV  60
FGASNVAKLL NELNATQRED AVNSLAYEAE YRLRDPVYGC VGLISILQHK LKQIQDDLLN  120
AKKELSTYIG PTAMLPIIQH QGYIQQQHPN IPSSSTMMPY NMQPMLGLQP GMQQHGAQLM  180
LRDPQQQQVI EAHQLTAMMA AREQQEMLGT YEQQQPQQQQ QFDNGFDSAG PVTATGFHQL  240
SSSVSPSLAL GGSFDNNYQI QQTQQEHSHA QHHQVQVQPH QLLQQQNQLP QQPETPQQQQ  300
RAKSEEERSI GPSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-50151381129LOB family transfactor Ramosa2.1
5ly0_B3e-50151381129LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269|PubMed:12787254, ECO:0000269|PubMed:15821980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019234324.11e-151PREDICTED: LOB domain-containing protein 36-like isoform X2
SwissprotQ9FKZ32e-83LBD36_ARATH; LOB domain-containing protein 36
TrEMBLA0A1J6K9Q51e-148A0A1J6K9Q5_NICAT; Lob domain-containing protein 36
STRINGXP_009774046.11e-148(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-82ASYMMETRIC LEAVES 2-like 1
Publications ? help Back to Top
  1. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]
  2. Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A
    SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 92(6): p. 661-674
    [PMID:27605094]