PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00476g02001.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family GRAS
Protein Properties Length: 513aa    MW: 56623.3 Da    PI: 5.1603
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00476g02001.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS417.89.3e-1281505121374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                               lv++L++cA  +++g+++la +l+ +l+ l  a ++++ + ++a yf++AL++rl+  +s +   ++ s+       e+ + +  
  Peinf101Scf00476g02001.1 150 LVHVLMTCAASIQHGEFSLAGSLIDQLQALltAMNTDSGIGKVAGYFVNALSRRLFAPQSACL--INGSAC------ENETLYYN 226
                               689**************************9867777799******************444443..333333......33445668 PP

                      GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                               f+e+sP+lkf+h+taNqaIlea++g+++vH+iDf++++GlQWpaL+qaLa R++gpp+lR+Tg+g+p+s+ +++l+e+g +La++
  Peinf101Scf00476g02001.1 227 FYEASPCLKFAHFTANQAILEAFQGHDCVHVIDFNLMHGLQWPALIQALALRSGGPPMLRLTGIGPPSSDGRDSLREIGLKLAEL 311
                               ************************************************************************************* PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                               A++++v+f f+ ++a+rl+d+++++L+v+++E++aVn+++q h+ll ++  ++   d++L+ ++sl+Pkvv++veqea+hn+ +F
  Peinf101Scf00476g02001.1 312 ARSVNVRFAFRGVAATRLDDVKPWMLQVSSKEVVAVNSIMQFHKLLGQNPGSPI--DSILDWMRSLNPKVVTIVEQEANHNQLEF 394
                               *************999******************************77766666..***************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               l+rf+eal+yys++fdslea     ++ ++ + +++++rei+n+v+ceg  r+erhe + kWr+rl++aGFkp++l+++a kqa+
  Peinf101Scf00476g02001.1 395 LDRFTEALYYYSTMFDSLEAC---PAQPEKALAEMYIQREICNIVCCEGLTRVERHEPMPKWRARLSRAGFKPLHLGSNAFKQAS 476
                               *******************99...566677788888************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +ll  ++ +gy vee++g+l+lgW++rpL+++SaW+
  Peinf101Scf00476g02001.1 477 MLLTLFSAEGYCVEENEGCLTLGWHSRPLIAASAWQ 512
                               ***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120416.0E-263197IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011297.9E-1731104No hitNo description
PROSITE profilePS5098560.763124492IPR005202Transcription factor GRAS
PfamPF035143.2E-125150512IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MSPQDSSITS SSSSSSSCPM HLNPPDHQQM DNLLAGAGYV VRSSELGQVA QRLEHLENVM  60
VNNPIMSMEI ANDLVHYNPS DLGSWVDSLL NELHDNQPLL DFPAVPSDPS YVIVNSNVVS  120
GPSATWTDKN QEPQQLTITT REQEDSGIRL VHVLMTCAAS IQHGEFSLAG SLIDQLQALL  180
TAMNTDSGIG KVAGYFVNAL SRRLFAPQSA CLINGSACEN ETLYYNFYEA SPCLKFAHFT  240
ANQAILEAFQ GHDCVHVIDF NLMHGLQWPA LIQALALRSG GPPMLRLTGI GPPSSDGRDS  300
LREIGLKLAE LARSVNVRFA FRGVAATRLD DVKPWMLQVS SKEVVAVNSI MQFHKLLGQN  360
PGSPIDSILD WMRSLNPKVV TIVEQEANHN QLEFLDRFTE ALYYYSTMFD SLEACPAQPE  420
KALAEMYIQR EICNIVCCEG LTRVERHEPM PKWRARLSRA GFKPLHLGSN AFKQASMLLT  480
LFSAEGYCVE ENEGCLTLGW HSRPLIAASA WQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-611335112378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019192394.10.0PREDICTED: DELLA protein DWARF8-like
TrEMBLA0A498KHD30.0A0A498KHD3_MALDO; Uncharacterized protein
STRINGXP_008343960.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1514158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-156GRAS family protein