PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Scf00482g02016.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

NAC

Protein Properties

Length: 257aa MW: 29587 Da PI: 4.8527

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Scf00482g02016.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.4	1.6e-54	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeelv++yLk+k++g ++el ++i+evd+yk+ePwdL k + +++ ewyfF +rd+ky++g r+nrat++gyW Peinf101Scf00482g02016.1 6 LPPGFRFHPTDEELVNYYLKRKIHGLEIEL-NIIPEVDLYKCEPWDLAeKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYW 89 79**************************.99**********84335556888*********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+tgkd++v+s +++ +g+kktLv+y+grap+g +tdWvmheyr+ Peinf101Scf00482g02016.1 90 KSTGKDRRVTS-QNRSIGMKKTLVYYRGRAPQGMRTDWVMHEYRI 133 *******.8899*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-63	4	157	IPR003441	NAC domain
PROSITE profile	PS51005	59.621	6	156	IPR003441	NAC domain
Pfam	PF02365	6.0E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSPVGLPPGF RFHPTDEELV NYYLKRKIHG LEIELNIIPE VDLYKCEPWD LAEKSFLPSR 60 DPEWYFFGPR DRKYPNGFRT NRATRAGYWK STGKDRRVTS QNRSIGMKKT LVYYRGRAPQ 120 GMRTDWVMHE YRIDDNVCEG TSGIQDTYAL CRVFKKNGVC SEIEEQLGQS SSSVPFVEYP 180 RQGTINFNEY ETPSPDVPLA NNSSSCMELE DEEDKDDSWM QFITEDAWCS TGSNSFHIGE 240 EISPLTPIAN SSYVSHV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-54	4	157	13	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225973.1	1e-146	PREDICTED: NAC domain-containing protein 86 isoform X2
Swissprot	A4VCM0	3e-86	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A1S4DAP2	1e-144	A0A1S4DAP2_TOBAC; NAC domain-containing protein 86-like isoform X2
TrEMBL	A0A1U7XVJ6	1e-144	A0A1U7XVJ6_NICSY; NAC domain-containing protein 74 isoform X2
STRING	XP_009790484.1	1e-143	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4621	24	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-127	NAC domain containing protein 57

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]